PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009618151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WOX | ||||||||
Protein Properties | Length: 226aa MW: 25918.7 Da PI: 9.8138 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3e-19 | 11 | 72 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++ +eql Lee+++k r+p+a++++ ++++l +++ ++V++WFqN++a++++ XP_009618151.1 11 RPTRWSPAPEQLMFLEEMYRKgLRNPNATQIQNITAHLssygKIEGKNVFYWFQNHKARDRQ 72 569*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 112.2 | 2.8e-36 | 13 | 73 | 4 | 64 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 tRW+P peQ++ Lee+y++Glr+Pn+ +iq+ita+L++yGkie+kNVfyWFQN+kaR+rqk XP_009618151.1 13 TRWSPAPEQLMFLEEMYRKGLRNPNATQIQNITAHLSSYGKIEGKNVFYWFQNHKARDRQK 73 8***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.398 | 8 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.1E-5 | 10 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-10 | 11 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.29E-4 | 11 | 73 | No hit | No description |
Pfam | PF00046 | 6.4E-17 | 11 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 14 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSFLKREKMT RPTRWSPAPE QLMFLEEMYR KGLRNPNATQ IQNITAHLSS YGKIEGKNVF 60 YWFQNHKARD RQKLKKKLLA QMNQQQFFSQ YPVDAHSTTT TSTNTNNLFH CPTDHYSHNS 120 SSVVNQICPI SSSGLLQEGG IKDESSRVMT YLYPMDISRP VENIENCMIR PYGKDWVLMM 180 NISPNTLPCI NKPLKTLPLF PITETNGLKE QISTKSASTL SLSFSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ628172 | 1e-102 | FJ628172.1 Petunia x hybrida cultivar W138 WOX3 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618151.1 | 1e-171 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
Refseq | XP_016464869.1 | 1e-171 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A1S3ZKN4 | 1e-169 | A0A1S3ZKN4_TOBAC; WOX3b | ||||
STRING | XP_009618151.1 | 1e-170 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-38 | WOX family protein |