PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009618026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 19089.6 Da PI: 10.0829 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 32 | 82 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr ++ +gr++AeIrd ++ + r +lg+f+taeeAa a+++a+++l+g XP_009618026.1 32 SHFRGVRKRP-WGRYAAEIRDpWK----KSRRWLGTFDTAEEAALAYDEAARSLRG 82 78********.**********883....5999**********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.17E-30 | 32 | 89 | No hit | No description |
Pfam | PF00847 | 7.5E-13 | 32 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 32 | 90 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.9E-33 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.773 | 33 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-30 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-10 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-10 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MVALSSTMCG GGGGGGGSQG NTSQTVRTPK ESHFRGVRKR PWGRYAAEIR DPWKKSRRWL 60 GTFDTAEEAA LAYDEAARSL RGPRAKTNFG LAAIDPPPAQ QKLPHWCFNA LSYGSYLEDR 120 SRFGTGETTV ASSEYSGYKL ESIGVVMNEH EKKTKIEKKK PFLFDLNLPA PLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 30 | 91 | 2 | 64 | ATERF1 |
3gcc_A | 1e-20 | 30 | 91 | 2 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB669078 | 0.0 | AB669078.1 Nicotiana tabacum NtERF#074 gene for ethylene response factor #74, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618026.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A1U7XD61 | 4e-88 | A0A1U7XD61_NICSY; ethylene-responsive transcription factor 9-like | ||||
TrEMBL | R4WAR6 | 4e-88 | R4WAR6_TOBAC; Ethylene response factor #74 | ||||
STRING | XP_009618026.1 | 1e-126 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14136 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 6e-23 | ERF domain protein 12 |