PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618001.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 422aa    MW: 46834.8 Da    PI: 5.5566
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.4e-083714042154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_009618001.1 371 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 404
                     569*****************************87 PP
2ELK27.76.3e-10325346122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++L+++++E++
  XP_009618001.1 325 ELKHELKQGYKEKLVDIREEIL 346
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.2E-18163207IPR005540KNOX1
PfamPF037906.3E-17165206IPR005540KNOX1
SMARTSM012564.0E-28215270IPR005541KNOX2
PfamPF037911.4E-20219269IPR005541KNOX2
PfamPF037892.2E-6325346IPR005539ELK domain
PROSITE profilePS5121310.144325345IPR005539ELK domain
SMARTSM011889.2E-4325346IPR005539ELK domain
PROSITE profilePS5007111.742345408IPR001356Homeobox domain
SuperFamilySSF466894.28E-16347411IPR009057Homeodomain-like
SMARTSM003892.2E-11347412IPR001356Homeobox domain
CDDcd000864.52E-12348409No hitNo description
Gene3DG3DSA:1.10.10.601.7E-25352411IPR009057Homeodomain-like
PfamPF059201.0E-17365404IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAYNPNHMSQ EMDMHHFSDE NSAVLRSILP EQLAQSSPDV KPLDHQQPPT WLNSAILRQE  60
SHYTGTGGRG VGENFLNLHS NSESSAAASQ ASNQWLSRSI LQRNVSDVQT SNNSSAVIAA  120
ADLKNDDGNN NNDNGNNNAG GQLTDSEVVG GGGTDGILNW QNAGYKAEIL AHPLFEQLLS  180
AHVACLRIAT PVDQLPRIDA QLAQSQQVVA KYSTLGQNIG DDKELDQFLT HYVLLLCSFK  240
EQLQQHVRVH AMEAVMACWE IEQSLQSLTG VSPGEGTGAT MSDDEDDQVD SEANLFDGSL  300
DGHDGMGFGL PTESERSLME RVRQELKHEL KQGYKEKLVD IREEILRKRR AGKLPGDTTS  360
VLKAWWQSHA KWPYPTEEDK AKLVQETGLQ LKQINNWFIN QRKRNWHSNA SSSTTSKSKR  420
KR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401421RKRNWHSNASSSTTSKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0047970.0AB004797.1 Nicotiana tabacum NTH23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618001.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
RefseqXP_009618003.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
RefseqXP_016464582.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
RefseqXP_018631147.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1S3ZJS00.0A0A1S3ZJS0_TOBAC; homeobox protein knotted-1-like 3 isoform X1
STRINGXP_009618001.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-176KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]