PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009617997.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 26012.9 Da PI: 7.9339 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 7.8e-17 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +grWvAeI+d s ++ r +lg+f+ aeeAa a++ a++ l+g XP_009617997.1 38 KKYIGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAALAYDSAARLLRG 88 59********.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.61E-31 | 38 | 98 | No hit | No description |
PROSITE profile | PS51032 | 19.809 | 39 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-28 | 39 | 96 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-11 | 39 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-19 | 39 | 97 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-31 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-7 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-7 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MESSKPPSSE SLTNSTKNIQ EKQMAKTKSK LISSNDGKKY IGVRQRPSGR WVAEIKDSSQ 60 KLRLWLGTFD RAEEAALAYD SAARLLRGRN AKTNFKYQGI LKPNEQNCSL LGKNPRLYQL 120 LKHAIMKKLA GNKYQNEIET EPFVQENTGC NQDKEEVCRI QLQGSSSKVY SSVIVAPSFS 180 ASVTDQSGKK DEEEEEEEEE NHYQTSAQLF ECLFSHANKS SEENNGLNSS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-15 | 38 | 95 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-15 | 37 | 95 | 3 | 62 | ATERF1 |
3gcc_A | 7e-15 | 37 | 95 | 3 | 62 | ATERF1 |
5wx9_A | 3e-14 | 39 | 109 | 14 | 78 | Ethylene-responsive transcription factor ERF096 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617997.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A1S3YF72 | 1e-152 | A0A1S3YF72_TOBAC; ethylene-responsive transcription factor RAP2-11-like | ||||
STRING | XP_009617997.1 | 1e-170 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-17 | related to AP2 11 |