PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009617831.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 472aa MW: 51552.9 Da PI: 6.5893 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.1 | 4.8e-06 | 361 | 399 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ +L++l+ + +K + a++L +A+eYIk L XP_009617831.1 361 ARKEKMGDRITTLQQLVSPF-----GKTDTASVLSEAIEYIKFL 399 6778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.627 | 350 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0038 | 360 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-12 | 360 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.4E-10 | 360 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-6 | 362 | 403 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MAEEFQLGRG NWWESSSSSS TSSSRNNKFE SGILSSTTMP SVSTALNSMA NNFGCWQTEF 60 EDIKAKSSLN PMSVSGSDNS SMVFPADSQK LHASESSVGG GVLSGGPNLQ IVGLGLSSQG 120 LDWNQPFFRG DKAGSGFRSI LEEGLSSDPN YQQEGSSQQD HHWTQKIYPG NSDGSSVNDY 180 NNKQMDRGIS LDHQPVFNAP NMSSNLDNAP YGSPSNMLQG LLISDSQQES NFTSARSLYY 240 PPYNPSNCDV NPAAADVMPT SSSSSSWSKF PKQQWPLPPP HGQSHFSGTP FWNATSAAME 300 DVRSGFLPSI HQQLPNPTVD MKPKHTAEVR TIRTIAKKSS SETSNKRPRN ETPSQMPAFK 360 ARKEKMGDRI TTLQQLVSPF GKTDTASVLS EAIEYIKFLH EQVNVLSTPY MKSGASMQQH 420 QQTSDKSNVN PEVAKQDLRG RGLCLVPVSS TFPVTHETTV DFWTPTFGGT FR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 2e-45 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 2e-45 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617831.1 | 0.0 | PREDICTED: transcription factor bHLH112-like | ||||
TrEMBL | A0A1S3YNG4 | 0.0 | A0A1S3YNG4_TOBAC; transcription factor bHLH112-like | ||||
STRING | XP_009617831.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 3e-63 | bHLH family protein |