PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617782.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 300aa    MW: 33914.2 Da    PI: 6.5762
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617782.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.8e-082492822154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_009617782.1 249 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 282
                     469*****************************87 PP
2ELK26.31.7e-09203224122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  XP_009617782.1 203 ELKIELKQGFRSRIEDVREEIL 224
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-183680IPR005540KNOX1
PfamPF037902.9E-163879IPR005540KNOX1
SMARTSM012563.0E-2592147IPR005541KNOX2
PfamPF037911.6E-1895146IPR005541KNOX2
PROSITE profilePS512139.184203223IPR005539ELK domain
PROSITE profilePS5007111.677223286IPR001356Homeobox domain
SuperFamilySSF466894.02E-16225290IPR009057Homeodomain-like
SMARTSM003891.4E-10225290IPR001356Homeobox domain
CDDcd000864.81E-11226287No hitNo description
Gene3DG3DSA:1.10.10.607.0E-25230288IPR009057Homeodomain-like
PfamPF059201.0E-17243282IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQEQGVGLMG SSTGGGIGGL GPLGDVSMVI SEDNQRQLKG EIATHPLYEQ LLSAHVACLR  60
VATPIDQLPL IEAQFSQSHH LLRSYASQHH SHSLSPHERQ ELDNFLAQYL LVLCSFKEQL  120
QQHVRVHAVE AVMACREIEQ NLQLLTGATL GEGSGATMSD DEDELQMDFS LDQSGGDAHD  180
LMGMGFGLPT ESERSLMERV RQELKIELKQ GFRSRIEDVR EEILRKRRAG KLPGDTTTVL  240
KNWWQQHSKW PYPTEDDKAK LVEETGLQLK QINNWFINQR KRNWHSNSQS VTSLKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12226282864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279299RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4776900.0KJ477690.1 Solanum tuberosum class II knox protein (HOX2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617782.10.0PREDICTED: homeobox protein HD1
RefseqXP_016456715.10.0PREDICTED: homeobox protein HD1-like
SwissprotQ9FPQ81e-170KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A1S3YX940.0A0A1S3YX94_TOBAC; homeobox protein HD1-like
STRINGXP_009617782.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-168KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]