PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009617582.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 1001aa MW: 111280 Da PI: 7.6794

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009617582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.3	2.4e-39	151	228	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_009617582.1 151 CCQVQDCRTDLSNAKDYHRRHKVCDVHSKAAKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 228 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-30	147	213	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.872	149	226	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.29E-36	150	231	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-28	152	225	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	6.06E-7	771	880	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.8E-6	773	880	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.05E-7	774	881	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MAAHNYHGPV SGKKSMEWDL NDWKWDGDLF TAAPLNNNSV PSDCCKSKQL MFPIGSDIHP 60 ETSRISNCFP SGSDELLTLG NNDKRRKELE KRRRAIVIED DELDNEEEAG SLNLKLGGQL 120 YPVMEGDVEK WEGKSGKKTK IGGVLSNRAV CCQVQDCRTD LSNAKDYHRR HKVCDVHSKA 180 AKALVGNVMQ RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN RRRRKTHPEN VANGASMNDE 240 GGSNYLLISL LRILANVQSN SSDQTKDQDL LSHLLRNLAS LVGATNERNT WGLLSAPPEQ 300 RNAGTSMGAP KEESLRPTGN CLIPASEVTE KRMGRSDVEC GILQNPCAWQ PDSLCCRKES 360 SPINANASAK VKLNNIDLNN IYDDSQDGNQ KLQNSDASAN PGASSSGCPL WICHDPHKSS 420 PGTSGNSGST SSLSLSNSSG EAQSRTDRIV FKLFGKDPGD FPTALRKEIL DWLSHSPTDI 480 ESYIRPGCII LTIYLRMDKS IWEELYCDLN SGLRKLLNAS ADSFWQTGWV YTRVNDRVAF 540 LFNGQVVLDT SLPVKRHRSC GISIVKPIAV CASKRVQFLV KGFNLSRPTT RLLCALEGNY 600 LVQGNCTDMM VGADSCLDHE EIQSLSFPCI VPNVTGRGFI EVEDHGLSSN FFPFIVAEKD 660 VCSEIRTLES NIEVDEMADG FLQGTEKLQA RDQALEFLHE MGWLLHRSHL KFRVGSGVNL 720 NLFPFQRFKW LIEFSIDQDW CAVVKKLLDV FFNGVVDVGQ QSSLDVPLRE VGILHQAVRR 780 KCKSMVEVLL KYRPHGAFDK SGLKKQQDDR DYLFRPDAVG PGGLTPLHIV ASLAGFENLL 840 DALIDDPGQV GIEAWKSACD STGLTPNDYA CLRGHYSYIH IVQKKIGQKP GDEHVVLDIP 900 GSVLDSSIKQ KLSNGHRSVS IASLQTEKSL RKPIKTHCRQ CDQKYYYGNP GSSLAIYKPA 960 MLSMVAIAAI CVCVALLFKS SPEVLYSFRP FRWELLKYGS I

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MAAHNYHGPV SGKKSMEWDL NDWKWDGDLF TAAPLNNNSV PSDCCKSKQL MFPIGSDIHP  60
ETSRISNCFP SGSDELLTLG NNDKRRKELE KRRRAIVIED DELDNEEEAG SLNLKLGGQL  120
YPVMEGDVEK WEGKSGKKTK IGGVLSNRAV CCQVQDCRTD LSNAKDYHRR HKVCDVHSKA  180
AKALVGNVMQ RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN RRRRKTHPEN VANGASMNDE  240
GGSNYLLISL LRILANVQSN SSDQTKDQDL LSHLLRNLAS LVGATNERNT WGLLSAPPEQ  300
RNAGTSMGAP KEESLRPTGN CLIPASEVTE KRMGRSDVEC GILQNPCAWQ PDSLCCRKES  360
SPINANASAK VKLNNIDLNN IYDDSQDGNQ KLQNSDASAN PGASSSGCPL WICHDPHKSS  420
PGTSGNSGST SSLSLSNSSG EAQSRTDRIV FKLFGKDPGD FPTALRKEIL DWLSHSPTDI  480
ESYIRPGCII LTIYLRMDKS IWEELYCDLN SGLRKLLNAS ADSFWQTGWV YTRVNDRVAF  540
LFNGQVVLDT SLPVKRHRSC GISIVKPIAV CASKRVQFLV KGFNLSRPTT RLLCALEGNY  600
LVQGNCTDMM VGADSCLDHE EIQSLSFPCI VPNVTGRGFI EVEDHGLSSN FFPFIVAEKD  660
VCSEIRTLES NIEVDEMADG FLQGTEKLQA RDQALEFLHE MGWLLHRSHL KFRVGSGVNL  720
NLFPFQRFKW LIEFSIDQDW CAVVKKLLDV FFNGVVDVGQ QSSLDVPLRE VGILHQAVRR  780
KCKSMVEVLL KYRPHGAFDK SGLKKQQDDR DYLFRPDAVG PGGLTPLHIV ASLAGFENLL  840
DALIDDPGQV GIEAWKSACD STGLTPNDYA CLRGHYSYIH IVQKKIGQKP GDEHVVLDIP  900
GSVLDSSIKQ KLSNGHRSVS IASLQTEKSL RKPIKTHCRQ CDQKYYYGNP GSSLAIYKPA  960
MLSMVAIAAI CVCVALLFKS SPEVLYSFRP FRWELLKYGS I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	152	225	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009617582.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
TrEMBL	A0A1S4DHL5	0.0	A0A1S4DHL5_TOBAC; squamosa promoter-binding-like protein 12
STRING	XP_009617582.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1