PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617210.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 148aa    MW: 16370.4 Da    PI: 8.1878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617210.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-161363155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+G+r++k +g+Wv+eIr+p   g +  r +lg++ t e Aa a++ a  +l+ 
  XP_009617210.1 13 KKYRGIRRRK-WGKWVSEIRVP---G-SsERLWLGTYTTQEAAAVAHDIAYYCLRE 63
                    59*****998.**********8...4.34***********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.67E-241374No hitNo description
PROSITE profilePS5103221.0611474IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-251474IPR001471AP2/ERF domain
PfamPF008478.6E-91462IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-171474IPR016177DNA-binding domain
SMARTSM003809.1E-251480IPR001471AP2/ERF domain
PRINTSPR003672.8E-91526IPR001471AP2/ERF domain
PRINTSPR003672.8E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSSSDEGTSA EQKKYRGIRR RKWGKWVSEI RVPGSSERLW LGTYTTQEAA AVAHDIAYYC  60
LRESSLSLDK LNFPFMLPAV NVERGMSPRS VQKVASDAGM AIDAKLVTSY PTPTVKGGQQ  120
EMNGHVCQSV DNNGKSEALS ISVEDYLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14174172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617210.11e-108PREDICTED: ethylene-responsive transcription factor ERF020
RefseqXP_016468675.11e-108PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I82e-43ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1S3ZW751e-106A0A1S3ZW75_TOBAC; ethylene-responsive transcription factor ERF020-like
STRINGXP_009617210.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.18e-46ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]