PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009617179.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 695aa MW: 75971.1 Da PI: 7.1296 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.9e-07 | 280 | 300 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg XP_009617179.1 280 PCPEFRK-GACRRGDMCEYAHG 300 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 2.1E-20 | 11 | 161 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 8.39E-19 | 17 | 143 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.5E-11 | 20 | 128 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0015 | 59 | 89 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 4.29E-17 | 59 | 148 | No hit | No description |
PROSITE profile | PS50297 | 19.253 | 59 | 162 | IPR020683 | Ankyrin repeat-containing domain |
PRINTS | PR01415 | 7.9E-5 | 60 | 75 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.262 | 94 | 129 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.4E-4 | 94 | 126 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 7.9E-5 | 113 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2300 | 130 | 165 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.5E-6 | 275 | 301 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 280 | 302 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 280 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 308 | 338 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 310 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MNMNHLTVET EDTFASLLEF AANNDVEAFK SLMERDISGI HEVGLWYGRQ KGSKQMVLEH 60 RTPLMVAAMY GSVDVLKLIL SLPGVDVNRS CGRDNSTALH CAASGGSLNA VDAIKLLVQA 120 GADPNIKNTN GHRPLDVIVI SPKFHTMKSC LENLLKTDAT EDCNLRVSMA TSSSNSPPLS 180 PSPGNRSPSS ASDTTSSPRS AKSSDLPVPF TSEKKEYPID PSMPDIKNSI YSTDEFRMFS 240 FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT NCDRRVCFFA HTQEELRPLY VSAGSAVPSP RSNASAANAL 360 DFAAAMGLIP GSPSSVSVMP PSPFTPPMSP SANGISNIGW PQQNVPALHL PGSNLQSSRL 420 RSSLNARDIP AENLTMLSDF DVQQKQLLYE LSCLSHSSMN ANSFSHSVHP RTLTPSNLED 480 SFSAESSSPR YSDHSLTQAV FSPTHKSIGF NQFQQQQATL SPINTRFSPK TVESPLLQGS 540 FGVLPLRNMS PRGMEPISPM SSRASILAQS DKQQHFRSLS SRDLGSSASA IVGSPADTWS 600 NWGTATGKPD WAVNTEEFGR LRRSSSFELA NSEEEPDLSW VQSLVKESPQ EVKDKSASRV 660 SGVTSAGADI REASTSSSQI GQFDQLGAWM EQMKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215487 | 0.0 | AC215487.4 Solanum lycopersicum cultivar Heinz 1706 chromosome 0 clone C00SLm0076E07, complete sequence. | |||
GenBank | AC244298 | 0.0 | AC244298.9 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence. | |||
GenBank | AC244588 | 0.0 | AC244588.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence. | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617179.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1S3YZD9 | 0.0 | A0A1S3YZD9_TOBAC; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | XP_009617179.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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