PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617179.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 695aa    MW: 75971.1 Da    PI: 7.1296
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07280300526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd C +aHg
  XP_009617179.1 280 PCPEFRK-GACRRGDMCEYAHG 300
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.1E-2011161IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.39E-1917143IPR020683Ankyrin repeat-containing domain
PfamPF127962.5E-1120128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00155989IPR002110Ankyrin repeat
CDDcd002044.29E-1759148No hitNo description
PROSITE profilePS5029719.25359162IPR020683Ankyrin repeat-containing domain
PRINTSPR014157.9E-56075IPR002110Ankyrin repeat
PROSITE profilePS5008812.26294129IPR002110Ankyrin repeat
SMARTSM002483.4E-494126IPR002110Ankyrin repeat
PRINTSPR014157.9E-5113127IPR002110Ankyrin repeat
SMARTSM002482300130165IPR002110Ankyrin repeat
SMARTSM003569.5E-6275301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981280302IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4280300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035637310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MNMNHLTVET EDTFASLLEF AANNDVEAFK SLMERDISGI HEVGLWYGRQ KGSKQMVLEH  60
RTPLMVAAMY GSVDVLKLIL SLPGVDVNRS CGRDNSTALH CAASGGSLNA VDAIKLLVQA  120
GADPNIKNTN GHRPLDVIVI SPKFHTMKSC LENLLKTDAT EDCNLRVSMA TSSSNSPPLS  180
PSPGNRSPSS ASDTTSSPRS AKSSDLPVPF TSEKKEYPID PSMPDIKNSI YSTDEFRMFS  240
FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT NCDRRVCFFA HTQEELRPLY VSAGSAVPSP RSNASAANAL  360
DFAAAMGLIP GSPSSVSVMP PSPFTPPMSP SANGISNIGW PQQNVPALHL PGSNLQSSRL  420
RSSLNARDIP AENLTMLSDF DVQQKQLLYE LSCLSHSSMN ANSFSHSVHP RTLTPSNLED  480
SFSAESSSPR YSDHSLTQAV FSPTHKSIGF NQFQQQQATL SPINTRFSPK TVESPLLQGS  540
FGVLPLRNMS PRGMEPISPM SSRASILAQS DKQQHFRSLS SRDLGSSASA IVGSPADTWS  600
NWGTATGKPD WAVNTEEFGR LRRSSSFELA NSEEEPDLSW VQSLVKESPQ EVKDKSASRV  660
SGVTSAGADI REASTSSSQI GQFDQLGAWM EQMKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154870.0AC215487.4 Solanum lycopersicum cultivar Heinz 1706 chromosome 0 clone C00SLm0076E07, complete sequence.
GenBankAC2442980.0AC244298.9 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence.
GenBankAC2445880.0AC244588.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence.
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617179.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3YZD90.0A0A1S3YZD9_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009617179.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]