PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617147.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 427aa    MW: 47347.5 Da    PI: 8.2456
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.34.9e-3184189199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                     f+kv tpsdv+k++rlv+pk++ae++     +++ +++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  
  XP_009617147.1  84 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNDKGGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGaGElV 178
                     89****************************955666889*************************************************6657777 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ ++r+
  XP_009617147.1 179 KHRLFIDWRRR 189
                     88888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-4176191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-3181188IPR015300DNA-binding pseudobarrel domain
CDDcd100173.70E-2682172No hitNo description
PROSITE profilePS5086314.05784185IPR003340B3 DNA binding domain
SMARTSM010191.8E-2284190IPR003340B3 DNA binding domain
PfamPF023621.0E-2884189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MNFFTNRRGI QQQAAGSSKG MCPFSQSSSS SSTSSSQQQQ QQQHRESTEL LLMDSSPTAT  60
RNYGDGDEVA GGEAHHLIER EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF PLDSSSNDKG  120
GLLLNFEDRN GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF QRGAGELVKH  180
RLFIDWRRRP DAPDMNPFMV PHHFSNWNHG RLFLQRGPPA PSFTQQHPHS QYSHNLLLEA  240
GSNIAQQQQS HHYPHSYIYG IGNTSPAYYN TCFNNSSIST NATVVNANPC AGGSGNYARS  300
GATASQLISQ HELEIMQMQR GCSSVGGSSG GEPMVFNSVP VVQGKVAAKR LRLFGVNMDC  360
PMDHSDMFSS STIPTTYSNA PHFSSSLSTS STPFLQLRNF NSPLQVVPSD EESSDKGKAS  420
MSLDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-62771901114B3 domain-containing transcription factor NGA1
5os9_B5e-62771901114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6686480.0KF668648.1 Nicotiana benthamiana NGATHAb mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617147.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLA0A1S3ZPE40.0A0A1S3ZPE4_TOBAC; B3 domain-containing transcription factor NGA1-like
STRINGXP_009617147.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-64B3 family protein