PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616988.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 511aa    MW: 58110 Da    PI: 7.6322
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.8e-1826116199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   d + +++l++p  fa++ ++   ++++  led+sg++W+v++  + ++g+  +++GW +F +++gL+ gDf+vF++++ + f   v+
  XP_009616988.1  26 FFKVM--IDKSFRKILYFPPMFARSVSHL--TDQETYLEDSSGQRWRVTV--CDHKGSLAIRQGWPKFSSEHGLNLGDFLVFYYVEGQYF--IVQ 112
                     89999..88999999**********9766..4568***************..*******************************9876666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_009616988.1 113 IYDK 116
                     9887 PP
2B331.23.8e-104295041492
                     T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     + l lp +  +++  ++ k e   + l+ ++ + W + +   ++sg  vlt+GWk F+ a gL+ gD ++F+l++  + e+
  XP_009616988.1 429 DFLELPESW-RKYlmKKAKLERWIIFLRGPDKKIWPILY--HRRSGVDVLTNGWKFFAAAYGLNRGDDCLFELEN--QLEC 504
                     556666665.3665544455667899999**********..9999999************************865..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2223119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-2023119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0724117IPR003340B3 DNA binding domain
CDDcd100179.73E-1825115No hitNo description
SMARTSM010191.3E-1326117IPR003340B3 DNA binding domain
PfamPF023621.3E-1526116IPR003340B3 DNA binding domain
PROSITE profilePS5086310.123416511IPR003340B3 DNA binding domain
SMARTSM010190.032421509IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-12424504IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-9425500No hitNo description
Gene3DG3DSA:2.40.330.101.9E-10428502IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-7429503IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGCEKEASDE CKQNSLLFHG KRVSSFFKVM IDKSFRKILY FPPMFARSVS HLTDQETYLE  60
DSSGQRWRVT VCDHKGSLAI RQGWPKFSSE HGLNLGDFLV FYYVEGQYFI VQIYDKSGCQ  120
KIKFYSDFCK GKRKTRTYPE KTSQVKLLQT TDINPVNKRS KISAVSESEK VTCKAHITKF  180
ATNIDADTGK GQLVYPAVYV DESFCMVDRD AQYHQGDDRL CLHLSSFEMP ASKPLAEGTS  240
SLLKADDGNS NHVETNLRSQ TEPNLVVVAD YLNSEELLPK FEAEITGSDM VPAEDIPLLS  300
QKDQNDCPSA RETRLVKKEF EETAAKAYYP ARAISARETR LVKKEFEETA AKAYYPARAI  360
SARETRLVKK EFEETAAKAY YPARAISDSG KEPANGNEKV IKSEPADSGD MPSLTAVSYS  420
CLLEVDGRDF LELPESWRKY LMKKAKLERW IIFLRGPDKK IWPILYHRRS GVDVLTNGWK  480
FFAAAYGLNR GDDCLFELEN QLECIFAVRK L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616988.10.0PREDICTED: uncharacterized protein LOC104109401 isoform X15
TrEMBLA0A1J6IKJ00.0A0A1J6IKJ0_NICAT; B3 domain-containing protein
STRINGXP_009616981.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.19e-11B3 family protein