PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009616794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 276aa MW: 30364.6 Da PI: 8.9624 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.6e-39 | 42 | 103 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++a++cprC stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn++sss XP_009616794.1 42 KDQAVNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNRRSSS 103 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-29 | 35 | 100 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.3E-33 | 43 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.742 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MDTTQWTQDI GLVTSMAAEI DPPNVTCSRP SSTLEKKVRP QKDQAVNCPR CSSTNTKFCY 60 YNNYSLTQPR YFCKTCRRYW TEGGTLRNVP VGGGSRKNRR SSSSLSSSSS SSQKLPDSNP 120 NPSLSHQNPN YKINLGNSQD FNIGLPSIIH DHNYFHGVPD FLEFPKMDRG NNGNNQPLSS 180 TSSTTPISTM DLLRTGIASR GLTSFISTPT PDLNALYTSS FLSGIQENNA KMMFPFGFLN 240 KQLSGTSVEA ENYNQSKGQE NSSAGYWNGM LGGGSW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975522 | 8e-68 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616794.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like | ||||
TrEMBL | A0A1S4A1L9 | 0.0 | A0A1S4A1L9_TOBAC; dof zinc finger protein DOF2.5-like | ||||
STRING | XP_009616794.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 3e-49 | Dof family protein |