PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616538.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 581aa    MW: 66430.7 Da    PI: 5.8858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11321363754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      +Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A+eY+ +L
  XP_009616538.1 321 VAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 363
                     68*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-206156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.586314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-11316368No hitNo description
SuperFamilySSF474597.07E-16317377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-15320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9321364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15321377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MELMHLMERL RPIMGLKNWD YCVLWKLSED QRFLEWICCC CGGAEQNMHS CEQEILFPDS  60
STSPCRDVMF QHPRTTACDL LAQLPSSLAL DSGIYAQALL SNQAKWLNFV PFSESNMSNL  120
QETIGTRVLI PSPLGLLELF SAKQLPEDEK VIEFISAQCN IHLEQHKFPS NGDDNTNSQN  180
IYQQIVSPVT SRDHSDHLSY DFPLKRKNLD TSSVNFLPHF NTYNTSEIEN NTTTMLFDQS  240
TSDVTHFSNS MENKYMSEMD AYLQKQMMRN SSNQAGLIDD ESVKQHDNGR SNSGSDSDQN  300
EDEDDPKFRR RNGKGQSKNL VAERKRRKKL NERLYALRAL VPKISKLDRA SILGDAIEYV  360
MELEKQVKDL QLELEEHSDD DQSRRNQNQV QPEVLGQNGS DQNNRPKSEN VKLSNGSHRG  420
LSSNSNGSID PSGQNQVVDE NDKLQQMEPQ VEVAQLDGNE FFVKVFREHK AGGFVRILEA  480
LNSLGLEVTN VNATRHTCLV SSIFKVEKRD NEMVQADHVR DSLLELTRNP SRGWSEMGRP  540
LSENNANGST DYLHNHQNQH HLENNHQKQA NSHHFHRHHH M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-133223671257Transcription factor MYC2
5gnj_B6e-133223671257Transcription factor MYC2
5gnj_E6e-133223671257Transcription factor MYC2
5gnj_F6e-133223671257Transcription factor MYC2
5gnj_G6e-133223671257Transcription factor MYC2
5gnj_I6e-133223671257Transcription factor MYC2
5gnj_M6e-133223671257Transcription factor MYC2
5gnj_N6e-133223671257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308328RRRNGKGQSKNLVAERKRRKK
2322329ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-107HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616537.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
RefseqXP_009616538.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
RefseqXP_009616540.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
RefseqXP_018630710.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
TrEMBLA0A1S3Y8A60.0A0A1S3Y8A6_TOBAC; transcription factor ABORTED MICROSPORES-like
STRINGXP_009616536.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-132bHLH family protein