PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009616489.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 345aa MW: 39932.6 Da PI: 9.1418

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009616489.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.3e-38	98	250	3	131
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...eaessss 80 kkdrhski T++g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl ++k ikel ++ s +s sec + ++s XP_009616489.1 98 SKKDRHSKINTAKGPRDRRIRLSIDIARNFFNLQDMLRFEKASKTLEWLLIKSKSDIKELSKSrisklrcstvmganSETSTSECevvSGIDESP 192 69***********************************************************99999999999887444446675452222222 PP TCP 81 sasnsssg..........kaaksaakskksqksaasalnlakesrakarararertrekmr 131 s+++ + k++++++++ ks ++aa + +akesr++ar+rarert+ k++ XP_009616489.1 193 SNHK---AnakgnscnkeKKKEKEKEKDKSVRRAAFYHPFAKESRKQARERARERTKLKKN 250 2222...133456677744444444777778888889*****************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-41	98	249	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.135	99	157	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.211	231	248	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MYNSSNYSCN YNPIFSSNLF NIPSPCMQYE HELFFQYYHD QLQQNLDDTL AEISTETAII 60 NTADSSKDEA IISRNELEQD QEARKNKKGK VSSNKRVSKK DRHSKINTAK GPRDRRIRLS 120 IDIARNFFNL QDMLRFEKAS KTLEWLLIKS KSDIKELSKS RISKLRCSTV MGANSETSTS 180 ECEVVSGIDE SPSNHKANAK GNSCNKEKKK EKEKEKDKSV RRAAFYHPFA KESRKQARER 240 ARERTKLKKN FCESHRLNLR SWNFSQRGEE SAGYTSMNHP CQEMQAEVEE LTSHNEKQLL 300 LGTKVNIGYD CNLVATGNWN PFSIFNYQQN AEIPHEHQIT DFPFS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MYNSSNYSCN YNPIFSSNLF NIPSPCMQYE HELFFQYYHD QLQQNLDDTL AEISTETAII  60
NTADSSKDEA IISRNELEQD QEARKNKKGK VSSNKRVSKK DRHSKINTAK GPRDRRIRLS  120
IDIARNFFNL QDMLRFEKAS KTLEWLLIKS KSDIKELSKS RISKLRCSTV MGANSETSTS  180
ECEVVSGIDE SPSNHKANAK GNSCNKEKKK EKEKEKDKSV RRAAFYHPFA KESRKQARER  240
ARERTKLKKN FCESHRLNLR SWNFSQRGEE SAGYTSMNHP CQEMQAEVEE LTSHNEKQLL  300
LGTKVNIGYD CNLVATGNWN PFSIFNYQQN AEIPHEHQIT DFPFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616489.1	0.0	PREDICTED: transcription factor CYCLOIDEA-like
TrEMBL	A0A314L154	0.0	A0A314L154_NICAT; Transcription factor tcp18
STRING	XP_009616486.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	2e-24	TCP family protein