PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616487.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 380aa    MW: 43971.3 Da    PI: 8.8235
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.64.3e-381332853131
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...eaessss 80 
                      kkdrhski T++g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl ++k  ikel ++              s +s sec   +  ++s 
  XP_009616487.1 133 SKKDRHSKINTAKGPRDRRIRLSIDIARNFFNLQDMLRFEKASKTLEWLLIKSKSDIKELSKSrisklrcstvmganSETSTSECevvSGIDESP 227
                     69*************************************************************99999999999887444446675452222222 PP

             TCP  81 sasnsssg..........kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                     s+++   +          k++++++++ ks ++aa  + +akesr++ar+rarert+ k++
  XP_009616487.1 228 SNHK---AnakgnscnkeKKKEKEKEKDKSVRRAAFYHPFAKESRKQARERARERTKLKKN 285
                     2222...133456677744444444777778888889*******************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-41133284IPR005333Transcription factor, TCP
PROSITE profilePS5136932.135134192IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.211266283IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEGNVNLASL CLFRRFSFVN FISCSYSCVY NIEQTMYNSS NYSCNYNPIF SSNLFNIPSP  60
CMQYEHELFF QYYHDQLQQN LDDTLAEIST ETAIINTADS SKDEAIISRN ELEQDQEARK  120
NKKGKVSSNK RVSKKDRHSK INTAKGPRDR RIRLSIDIAR NFFNLQDMLR FEKASKTLEW  180
LLIKSKSDIK ELSKSRISKL RCSTVMGANS ETSTSECEVV SGIDESPSNH KANAKGNSCN  240
KEKKKEKEKE KDKSVRRAAF YHPFAKESRK QARERARERT KLKKNFCESH RLNLRSWNFS  300
QRGEESAGYT SMNHPCQEMQ AEVEELTSHN EKQLLLGTKV NIGYDCNLVA TGNWNPFSIF  360
NYQQNAEIPH EHQITDFPFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616489.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A314L1540.0A0A314L154_NICAT; Transcription factor tcp18
STRINGXP_009616486.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-24TCP family protein