PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009616486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 380aa MW: 43971.3 Da PI: 8.8235 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.6 | 4.3e-38 | 133 | 285 | 3 | 131 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...eaessss 80 kkdrhski T++g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl ++k ikel ++ s +s sec + ++s XP_009616486.1 133 SKKDRHSKINTAKGPRDRRIRLSIDIARNFFNLQDMLRFEKASKTLEWLLIKSKSDIKELSKSrisklrcstvmganSETSTSECevvSGIDESP 227 69*************************************************************99999999999887444446675452222222 PP TCP 81 sasnsssg..........kaaksaakskksqksaasalnlakesrakarararertrekmr 131 s+++ + k++++++++ ks ++aa + +akesr++ar+rarert+ k++ XP_009616486.1 228 SNHK---AnakgnscnkeKKKEKEKEKDKSVRRAAFYHPFAKESRKQARERARERTKLKKN 285 2222...133456677744444444777778888889*******************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-41 | 133 | 284 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.135 | 134 | 192 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.211 | 266 | 283 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MEGNVNLASL CLFRRFSFVN FISCSYSCVY NIEQTMYNSS NYSCNYNPIF SSNLFNIPSP 60 CMQYEHELFF QYYHDQLQQN LDDTLAEIST ETAIINTADS SKDEAIISRN ELEQDQEARK 120 NKKGKVSSNK RVSKKDRHSK INTAKGPRDR RIRLSIDIAR NFFNLQDMLR FEKASKTLEW 180 LLIKSKSDIK ELSKSRISKL RCSTVMGANS ETSTSECEVV SGIDESPSNH KANAKGNSCN 240 KEKKKEKEKE KDKSVRRAAF YHPFAKESRK QARERARERT KLKKNFCESH RLNLRSWNFS 300 QRGEESAGYT SMNHPCQEMQ AEVEELTSHN EKQLLLGTKV NIGYDCNLVA TGNWNPFSIF 360 NYQQNAEIPH EHQITDFPFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616489.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A314L154 | 0.0 | A0A314L154_NICAT; Transcription factor tcp18 | ||||
STRING | XP_009616486.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 4e-24 | TCP family protein |