PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616283.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 229aa    MW: 25563.5 Da    PI: 7.7466
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616283.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA84.91.2e-26115191158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk....................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep++VNaKQy++Il+RRq+Rak+e+ekk                      +  + pylheSRh hAl+R+Rg+gGrF
  XP_009616283.1 115 DEPVFVNAKQYHGILRRRQSRAKAESEKKllkarklkdeyqlcwtisarP-NIIQLPYLHESRHLHALKRARGCGGRF 191
                     79******************************************998752.55789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.2E-27113194IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115230.364114194IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-25116191IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860119139IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTSSLHYHSD GSENEQPEKQ SEAHSESSSP ATGMSVPGIA TPNMHYVMPT QLGNGNAMLQ  60
AQTAYPYPDP YYRSIFAPYD AQPYPTQPYP AQPMVHVQLM GIQQAGVPLP SDAIDEPVFV  120
NAKQYHGILR RRQSRAKAES EKKLLKARKL KDEYQLCWTI SARPNIIQLP YLHESRHLHA  180
LKRARGCGGR FTAKKTDNQQ KQDESGDNSQ VNINLESEKN EVASAENAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-15114203171NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129150RRRQSRAKAESEKKLLKARKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133700.0BT013370.1 Lycopersicon esculentum clone 135390R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616281.11e-172PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_009616282.11e-172PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_009616283.11e-172PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_016464642.11e-172PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_016464643.11e-172PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_018630642.11e-172PREDICTED: nuclear transcription factor Y subunit A-7 isoform X1
TrEMBLA0A1S3ZJX41e-171A0A1S3ZJX4_TOBAC; nuclear transcription factor Y subunit A-7 isoform X1
STRINGXP_009616281.11e-172(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.29e-46nuclear factor Y, subunit A7