PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616196.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 247aa    MW: 27028.9 Da    PI: 6.3066
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.5e-38391401101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++ap++ ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+ael
  XP_009616196.1  39 PCGACKFLRRKCISGCIFAPHYGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTITYEAQARLSDPVYGCVSTILALQQQVASLQAEL 133
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     a+++++l
  XP_009616196.1 134 AVVQTQL 140
                     **99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.55538140IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-3839137IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDEPSSDGTS ENRHKGPGKR ATGAVEPLAS TTLLTSTAPC GACKFLRRKC ISGCIFAPHY  60
GSDQGAARFA AVHKVFGASN VSKLLLHIPA NRRHDAVVTI TYEAQARLSD PVYGCVSTIL  120
ALQQQVASLQ AELAVVQTQL INNRYAMENA LQTSQQQHHL QQQQLHQEHH IAILQPTYSN  180
NSSVSNNLIN NINSANTFNS TAFDQLPDDS CATNVPNNSP SFDPIHQEDE EEEESHNPIA  240
FTNQMFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-38291461115LOB family transfactor Ramosa2.1
5ly0_B4e-38291461115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754404e-85HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755134e-85HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616196.10.0PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV36e-74LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A1S4DBV11e-149A0A1S4DBV1_TOBAC; LOB domain-containing protein 20-like
STRINGXP_009616196.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-58LOB domain-containing protein 20