PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009615724.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 307aa MW: 34432.1 Da PI: 6.3959

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009615724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106	1.9e-33	171	228	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers edp+vv++tYeg+Hnh+ XP_009615724.1 171 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSYEDPSVVITTYEGQHNHH 228 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.7E-35	155	230	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-29	162	230	IPR003657	WRKY domain
PROSITE profile	PS50811	31.984	165	230	IPR003657	WRKY domain
SMART	SM00774	4.6E-39	170	229	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	171	228	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MSDNNPFYHD YMGTGGVNNA FPNFFGDQNP SIYDQIPTNT QTLHQDFDPS SYMSTLTECL 60 HGSMDYNSLS NVLGMSCSSS EVVCPPSDQE SSRKNSAEIP LTPNSLVSSS SSEAGGEEDS 120 SKSKKDLQAN DQCEDGDDKS KKVSKVKKKG EKKQKEPRFA FMTKSEIDNL EDGYRWRKYG 180 QKAVKNSPFP RSYYRCTSQK CSVKKRVERS YEDPSVVITT YEGQHNHHCP ATLRGNAAAA 240 MLSPSFLSSS QLIPQDVLFA QMLTNPTNQN QLPINYSVYN YQQQPQLTPE YGLFQDMVAS 300 LIHKREP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-29	160	231	7	78	Probable WRKY transcription factor 4
2lex_A	9e-29	160	231	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615724.1	0.0	PREDICTED: probable WRKY transcription factor 71
Refseq	XP_016468091.1	0.0	PREDICTED: probable WRKY transcription factor 71
TrEMBL	A0A1S3ZUL5	0.0	A0A1S3ZUL5_TOBAC; probable WRKY transcription factor 71
STRING	XP_009615724.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	2e-51	WRKY DNA-binding protein 71