PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009615714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 25393.2 Da PI: 4.7559 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.4e-18 | 88 | 138 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r+++g+f++ae Aa a+++a+ +++g XP_009615714.1 88 NYRGVRKRP-WGKFAAEIRDSTRNG--VRVWIGTFDSAEAAALAYDQAAFAMRG 138 59*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.39E-20 | 87 | 147 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-22 | 88 | 148 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.655 | 88 | 146 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-13 | 88 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-29 | 88 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-36 | 88 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-10 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDSSFIHYQN PYDQNYSPES SSWDELLFHY NSLPFNVNDT EDMFLFNLVA EGDRTVVKES 60 SAETINSSSS SGTKEEEVTS CEPEKEKNYR GVRKRPWGKF AAEIRDSTRN GVRVWIGTFD 120 SAEAAALAYD QAAFAMRGSL AILNFPVEIV KESLSEMKCK FDESCSPVIE LKKRHSMRKK 180 TQSRRNRVRK DESNVVVFED LGAEYLEELL SSSECVTNWF TI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-29 | 87 | 149 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-29 | 85 | 149 | 2 | 66 | ATERF1 |
3gcc_A | 3e-29 | 85 | 149 | 2 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 189 | RRNRVRK |
2 | 183 | 190 | RRNRVRKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016453436.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_018630421.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 1e-104 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S3YMC6 | 1e-161 | A0A1S3YMC6_TOBAC; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009615714.1 | 1e-164 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-48 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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