PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009615601.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 349aa    MW: 39233.9 Da    PI: 5.4132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009615601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12134185155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  XP_009615601.1 134 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 185
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.07E-11132189No hitNo description
SuperFamilySSF474596.02E-16133206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.723133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-12134204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-8139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MALETVIYPQ ESFGYSCKEY YIPANLSNYN YELGFLQGEE EMTFTSLLDT GNYDSNNNRE  60
SSSSPVMYNN NEKEYSWDPN YSSIEDSPNV NQLLMEASPA MIEPPPPARA ATVSGRRKRR  120
RTRSCKNKEE LENQRMTHIA VERNRRKQMN EYLAVIRSLM PPSYVQRGDQ ASIIGGAINF  180
VKELEHHLQT LEAQKITHSQ QQQQQQSDCH GSLSTPLFAD YFSFPQYSTH SNHSNSSTPA  240
DAAAATTCDS PLAAEKQLAL AEIEVTMAES HANLKILSKR RPKQLLKMVA GLQCLWLTVL  300
HLNVTTVDHM VLYSLSLKLE EGCQLTTADE IADAVNQLLG RIQEEAASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120RKRRR
2116121RKRRRT
3134145RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615601.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T48e-94BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S4BFQ70.0A0A1S4BFQ7_TOBAC; transcription factor bHLH96-like
STRINGXP_009615601.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]