PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009615391.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 483aa    MW: 54507.7 Da    PI: 7.956
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009615391.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.8e-3168125260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDg++WrKYGqK vkgs+fprsYY+Ct+++Cpv+kkve++  +++v+ei+Y+g Hnh+k
  XP_009615391.1  68 DDGFTWRKYGQKRVKGSNFPRSYYKCTQQSCPVRKKVECAP-NGQVIEIVYNGAHNHPK 125
                     8****************************************.***************85 PP
2WRKY102.62.2e-32276333259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++prsYY+Ct agC v+k+ver++++ k v++tYeg+Hnhe
  XP_009615391.1 276 EDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCIVRKHVERASDNLKSVITTYEGKHNHE 333
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-2757125IPR003657WRKY domain
SuperFamilySSF1182904.84E-2465125IPR003657WRKY domain
SMARTSM007742.3E-3367125IPR003657WRKY domain
PROSITE profilePS5081121.57468126IPR003657WRKY domain
PfamPF031061.1E-2468124IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-34260335IPR003657WRKY domain
SuperFamilySSF1182907.06E-28268335IPR003657WRKY domain
PROSITE profilePS5081136.862270335IPR003657WRKY domain
SMARTSM007742.7E-36275334IPR003657WRKY domain
PfamPF031068.0E-25276333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MLGSQMWFQG NEFIQQIKTP TETNVQQTLN SIELTNKQIP QQEEFTKKEN QFEQNGVFSS  60
SISPSSSDDG FTWRKYGQKR VKGSNFPRSY YKCTQQSCPV RKKVECAPNG QVIEIVYNGA  120
HNHPKTQSIR RPNMDNSYVI REVEEIGQEN ASVWRNQQFE CNKNVISYND NGLKRTSSAS  180
VLTEVSDPMS TNPKSMNVFE SAGTPELSST LTSYDGDDGD WATQESTLLG DDVNEYELEP  240
KRRKKESYSA EPSLLSRTVR ESKVVLQVES EIDILEDGYR WRKYGQKVVK GNPNPRSYYK  300
CTNAGCIVRK HVERASDNLK SVITTYEGKH NHEVPTANKT NGVAGHIRSA STLNGQPNCM  360
TTRKSVKGSN CRMQVQDLPF PFERKPFVGS EYLRPSFVGS YLGDLSFGAC SLQLPNFPLP  420
LPSRMSFPAR LNEPPLGDFH LNNHHLLPNG TSNSFLAVGN MQHINDDNNN SSLLKAKEEI  480
QWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-3368335877Probable WRKY transcription factor 4
2lex_A8e-3368335877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245PKRRKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2387897e-48AC238789.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0142A20, complete sequence.
GenBankHG9754447e-48HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755177e-48HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615391.10.0PREDICTED: probable WRKY transcription factor 2 isoform X3
RefseqXP_016488565.10.0PREDICTED: probable WRKY transcription factor 2
TrEMBLA0A1S4BI650.0A0A1S4BI65_TOBAC; probable WRKY transcription factor 2
STRINGXP_009615387.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.16e-71WRKY DNA-binding protein 4