PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009615089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25203.3 Da PI: 8.1936 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs+tgklye++s XP_009615089.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNTGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 78.3 | 2e-26 | 82 | 160 | 9 | 87 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 + ++++++ +qe+ +Lk ++e+Lq++qRh+lGedL++Ls k+L+qLe+qL++sl++iRs+++e l+e+ + l++k +el XP_009615089.1 82 QPSTDSQNTYQEYLNLKTRVEMLQQSQRHVLGEDLGQLSNKDLEQLERQLDSSLRQIRSTREESLTEMNKSLRMKFEEL 160 567889*********************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.641 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.39E-45 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-34 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-19 | 83 | 160 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.118 | 87 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN TGKLYEFCSS 60 SSMPTTLERY HRYNYAAVEG SQPSTDSQNT YQEYLNLKTR VEMLQQSQRH VLGEDLGQLS 120 NKDLEQLERQ LDSSLRQIRS TREESLTEMN KSLRMKFEEL GVALQTSWQS GQQQPDGFFH 180 PVASNNSMPI RYNTVLPENA EPSTQHATGV VPGYRFDIGG T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-22 | 1 | 74 | 1 | 73 | MEF2C |
5f28_B | 2e-22 | 1 | 74 | 1 | 73 | MEF2C |
5f28_C | 2e-22 | 1 | 74 | 1 | 73 | MEF2C |
5f28_D | 2e-22 | 1 | 74 | 1 | 73 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF448522 | 1e-133 | AF448522.1 Lycopersicon esculentum MADS-box transcription factor MADS-RIN (MADS-RIN) mRNA, complete cds. | |||
GenBank | AF448523 | 1e-133 | AF448523.1 Lycopersicon esculentum MADS-box transcription factor MADS-rin mRNA, complete cds. | |||
GenBank | DQ157795 | 1e-133 | DQ157795.1 Lycopersicon esculentum cultivar Pusa Ruby MADS-box transcription factor MADS-RIN mRNA, complete cds. | |||
GenBank | DQ157796 | 1e-133 | DQ157796.1 Lycopersicon esculentum cultivar Punjab Kesari MADS-box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009615089.1 | 1e-165 | PREDICTED: MADS-box protein CMB1-like isoform X2 | ||||
Swissprot | K4BND8 | 1e-98 | MADS4_SOLLC; MADS-box protein 04g005320 | ||||
TrEMBL | A0A1J6HU04 | 1e-139 | A0A1J6HU04_NICAT; Developmental protein sepallata 1 | ||||
STRING | XP_009615088.1 | 1e-161 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.2 | 3e-77 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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