PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009614946.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 221aa    MW: 24304.1 Da    PI: 8.4927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009614946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-193078355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr +  +gr++AeIrd ++    ++r++lg+f++aeeAaka++aa++ l+g
  XP_009614946.1 30 FRGVRKRQ-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAAKAYDAAARTLRG 78
                    8****888.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-172986No hitNo description
PfamPF008472.3E-122978IPR001471AP2/ERF domain
PROSITE profilePS5103222.8932986IPR001471AP2/ERF domain
SMARTSM003802.6E-362992IPR001471AP2/ERF domain
PRINTSPR003678.8E-103041IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-213087IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-313086IPR001471AP2/ERF domain
PRINTSPR003678.8E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRRGRATAAA KQAAEASPAA GSGGLKDIRF RGVRKRQWGR FAAEIRDPWK KTRVWLGTFD  60
SAEEAAKAYD AAARTLRGPK AKTNFPLPPY SHFNQTINPN GPFIDPRLYS QENHPIVIQR  120
PTSSSMSSTV ESFSGPRPPP RQQTAVLPSR KHPRSPPVVP DDCRSDCDSS SSVVEDGDCD  180
NDNENDNIVS SAFRKPLPFD LNFPPPMDAD SDDLHCTALC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-182687264ATERF1
3gcc_A4e-182687264ATERF1
5wx9_A4e-182486972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690860.0AB669086.1 Nicotiana tabacum NtERF#229 mRNA for ethylene response factor #229, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312757.11e-162ethylene-responsive transcription factor 3-like
RefseqXP_009614946.11e-162PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9SXS83e-73ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLR4WAK01e-161R4WAK0_TOBAC; Ethylene response factor #229
STRINGXP_009614946.11e-162(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-31ethylene responsive element binding factor 3