PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009614056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 637aa MW: 69982.7 Da PI: 6.9692 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 345.8 | 6.9e-106 | 270 | 637 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + ++e+A+a+s+g ++ a ++L+rls+ ++ +g+++qR +ay++ AL++r++ + p+ e + +e++ +++ +++vsP++k+++++ XP_009614056.1 270 QSITEAATAISEGINHVAVEILTRLSQVSNVRGSSIQRSTAYMVSALRSRVNP----TDYPPPVLEL---HNKEHTVSTQNLYDVSPCFKLGFMA 357 67899***********************************************9....2222233333...47888899999************** PP GRAS 98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN aIleav + +++H+iDfd++qG+Q++ Ll+aLa+++ e+p+ l+iT++ ++ g ++l+++g L+ A+++gv + fnv +a +++dl XP_009614056.1 358 ANLAILEAVTDHptNKIHVIDFDVGQGGQYLHLLHALAAKKsEKPAVLKITAFTEQVGGVDDRLNSIGVELTAEANKVGVCLYFNV-MACKITDL 451 ***********9999***********************77737777*********8888**************************9.7999**** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 + e+L ++p+EalaVn++++l+rl+desv++e+ rde+L+ vk+lsPkvv+vveqe++ n+++Fl+r+ ea+ yy alfdsl+a+++r++ er+ XP_009614056.1 452 SREKLGLEPDEALAVNFAFKLYRLPDESVTTENLRDELLRRVKGLSPKVVTVVEQELNGNTAPFLARVNEACGYYGALFDSLDATVSRDKLERVR 546 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ l+r+ n vaceg++r+er+e ++kWr+r+++aGF + p+s+ +a++ + l+ + g++v+e+sg +++gW++r+L+++SaWr XP_009614056.1 547 IEEG-LSRKMANSVACEGRDRVERCEVFGKWRARMSMAGFVQRPMSQLVANSLCSKLNSGTrgNPGFTVNEQSGGICFGWMGRTLTVASAWR 637 ****.******************************************9999887777654437999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.104 | 242 | 615 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-103 | 270 | 637 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MSSGFPGDFY GAGGINTGRS TMNNNTLRSQ LSGILPDPAT QIVLGRPNLM GKRSLAEFQQ 60 QQQFQFLQQQ QQNQQQQMIL QQQQQQQGLG FYLRNVKPRS YQQASPVDFS AVAISSISSE 120 FSSFSSNSNA STMNTRHTLP VLQQLRSQPA LPLANTNISG FSHPGTQTYS TGVYNRATIG 180 QELLSQESEK KMMNQLQELE KQLLDDNDEE DGDTVSVVTN NEWLQNLISP CQSQNQNQNQ 240 NQKLASLSPS SSTSSCASST ESPPISCPKQ SITEAATAIS EGINHVAVEI LTRLSQVSNV 300 RGSSIQRSTA YMVSALRSRV NPTDYPPPVL ELHNKEHTVS TQNLYDVSPC FKLGFMAANL 360 AILEAVTDHP TNKIHVIDFD VGQGGQYLHL LHALAAKKSE KPAVLKITAF TEQVGGVDDR 420 LNSIGVELTA EANKVGVCLY FNVMACKITD LSREKLGLEP DEALAVNFAF KLYRLPDESV 480 TTENLRDELL RRVKGLSPKV VTVVEQELNG NTAPFLARVN EACGYYGALF DSLDATVSRD 540 KLERVRIEEG LSRKMANSVA CEGRDRVERC EVFGKWRARM SMAGFVQRPM SQLVANSLCS 600 KLNSGTRGNP GFTVNEQSGG ICFGWMGRTL TVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-41 | 265 | 637 | 9 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ730248 | 0.0 | KJ730248.1 Nicotiana tabacum GRAS10 protein (GRAS10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009614056.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
TrEMBL | A0A1S4BBQ3 | 0.0 | A0A1S4BBQ3_TOBAC; scarecrow-like protein 8 | ||||
STRING | XP_009614056.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-137 | SCARECROW-like 8 |