PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613783.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 529aa MW: 61047.8 Da PI: 7.3426 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.9 | 1.6e-29 | 106 | 191 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++r+ k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_009613783.1 106 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRTGKKCREKFENLYKYYKKTKEGRAGR--QDGKHYRFFRQLEA 191 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 57.8 | 3e-18 | 395 | 469 | 2 | 75 |
trihelix 2 WtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 W+++e+ Li++r++me+r+++ ++ lWee+++km+ g+ +s+ +Ck+kw+++n + k+++ +k+++ +s XP_009613783.1 395 WPESEITRLIQLRTSMESRFQQmgFTGDEVLWEEIAAKMACLGYDKSSLMCKNKWDSINSYLMKCNKKRKENS-TS 469 *********************94346899**************************************999862.22 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.1 | 103 | 166 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.073 | 105 | 164 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.99E-19 | 106 | 171 | No hit | No description |
Pfam | PF13837 | 1.4E-20 | 106 | 192 | No hit | No description |
PROSITE profile | PS50090 | 6.829 | 387 | 453 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.18 | 391 | 455 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.9E-13 | 393 | 471 | No hit | No description |
CDD | cd12203 | 2.41E-19 | 395 | 460 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MEDQYGMADL RQYMNGRQLF ASIQPPELLP VTTHQHRNLI GPGHHQYEMV MGLAQVPAHG 60 LPPHHQQHHE FLPDSSTTAT AATTSSAGFS GLEMEAAAGG GDGSGRWPRQ ETLTLLEIRS 120 RLDSKFKEAN QKGPLWDEVS RIMSEEHGYQ RTGKKCREKF ENLYKYYKKT KEGRAGRQDG 180 KHYRFFRQLE ALYGETSNIN ATSVSETHHV GSHFPYNPIN NNNNNNHDPQ NFHQLAPKLS 240 DSLSLSNSSD FNTTSSDGSD LNENSKDQKG KKRRGKRSLK TKIKDFIDGQ MRKLMEKQEA 300 WFEKMMKMIE NKEKERILRE EEWRNQEKIR IEREHKFWAN ERAWIEARDA TLMDALHKLT 360 SKESKSATTN PSSDQETEFR GLNENQNDNV KDEHWPESEI TRLIQLRTSM ESRFQQMGFT 420 GDEVLWEEIA AKMACLGYDK SSLMCKNKWD SINSYLMKCN KKRKENSTSS CYNVQINSEQ 480 QGRSYCEARH VSNDQNAISD GSCFRYLMGD ADQNLWENYE LKLSKGGDN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 275 | KKRRGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 6e-61 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 6e-61 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613783.1 | 0.0 | PREDICTED: trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 1e-127 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A1S4D476 | 0.0 | A0A1S4D476_TOBAC; trihelix transcription factor PTL-like | ||||
STRING | XP_009613783.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3063 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-110 | Trihelix family protein |
Publications ? help Back to Top | |||
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