PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613678.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 340aa MW: 38151.1 Da PI: 5.2468 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 268 | 302 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_009613678.1 268 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 302 569*****************************885 PP | |||||||
2 | ELK | 41.2 | 3.4e-14 | 222 | 243 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_009613678.1 222 ELKGQLLRKYSGYLGSLKQEFM 243 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.2E-20 | 85 | 129 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.1E-23 | 87 | 126 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.8E-26 | 134 | 185 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.4E-21 | 138 | 184 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.174 | 222 | 242 | IPR005539 | ELK domain |
SMART | SM01188 | 2.8E-8 | 222 | 243 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.5E-11 | 222 | 243 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.957 | 242 | 305 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-12 | 244 | 309 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-19 | 244 | 319 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-28 | 247 | 307 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.62E-12 | 254 | 306 | No hit | No description |
Pfam | PF05920 | 8.0E-17 | 262 | 301 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 280 | 303 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEGGGSSGNT SCLMGYNGDD NNNNSGNAAL CPPPMMMMMM PPPINNNNAE SSNNIGGNNN 60 NNILFLPFMD NNNNNPHEDA NCSSTSIKSK IMAHPHYPRL LSAYVNCQKI GAPPEVVARL 120 EEVCATSATI GRNSGGIIGE DPALDQFMEA YCEMLTKYEQ ELSKPFKEAM VFLSRIECQF 180 KALTLTSSCE SALGEAIDRN GSSEEEVDVN NGFIDPQAED QELKGQLLRK YSGYLGSLKQ 240 EFMKKRKKGK LPKEARQQLL DWWTRHYKWP YPSESQKLAL AESTGLDQKQ INNWFINQRK 300 RHWKPSEDMQ FVVMDAAHPH YYMDNVLGNP FPMDMTPTLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 246 | LKQEFMKKRK |
2 | 243 | 247 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY169493 | 0.0 | AY169493.1 Nicotiana tabacum Knotted-1-like homeobox protein H1 (H1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613678.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like LET6 isoform X2 | ||||
Refseq | XP_016509033.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like LET6 isoform X2 | ||||
Swissprot | O22299 | 1e-156 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | A0A1S4D6R4 | 0.0 | A0A1S4D6R4_TOBAC; homeobox protein knotted-1-like LET6 isoform X2 | ||||
STRING | XP_009613677.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-138 | KNOX/ELK homeobox transcription factor |