PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 790aa MW: 88888.1 Da PI: 9.8332 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.4 | 3.6e-15 | 229 | 321 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ps+v++ l++ +fa ++ +++ ++ l++ + sW+vk+ + ++ +GWk Fv +n+Lk gD++vF++++ ++ v++fr XP_009613659.1 229 FMQPSYVFSPFHLSIALNFAGKYFLENYGNLVLRVPGRGRGSWSVKC--TTRGTNAKVHSGWKAFVLDNKLKCGDVCVFEVIKGTRLFIDVTIFR 321 6789*******************88888887888888888*******..66666677899********************987655556677766 PP | |||||||
2 | B3 | 42.7 | 1e-13 | 494 | 584 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ps+v++ rl ++ fa+++ +++ ++ l+l+ + sW vk+ ++ ++ ++ Wk Fv +n+Lk gD++vF+l++ ++ l v++fr+ XP_009613659.1 494 MQPSYVSTPYRLHISFLFARKYFLEE-CG-NLVLRVPGRGSWPVKYALGISKTQICFS--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRA 584 6799******************9884.44.8***************999999999998..*********************88777788888885 PP | |||||||
3 | B3 | 51.2 | 2.2e-16 | 695 | 781 | 7 | 94 |
.-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ps+v++ +l++ + a+++ ++ +++l+ +s +sW vk+i + lt+GWkeFv +n+Lk+gD++vF++++rs+ ++v XP_009613659.1 695 PSYVSSAsgpMQLSITLSRARKFFAT--RHSDVVLKVSSKKSWAVKCIL--GTANAKLTSGWKEFVLDNNLKVGDVCVFERVSRSKLLFNV 781 44444445567899999999999755..4558***************65..333346***********************88776664444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.941 | 1 | 65 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-11 | 5 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-6 | 5 | 63 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-11 | 5 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-20 | 218 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-18 | 219 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.87E-16 | 224 | 321 | No hit | No description |
SMART | SM01019 | 4.3E-10 | 226 | 323 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.237 | 226 | 323 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-12 | 228 | 321 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-18 | 483 | 584 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-18 | 484 | 584 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.265 | 490 | 585 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-12 | 493 | 585 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.05E-17 | 494 | 583 | No hit | No description |
Pfam | PF02362 | 9.5E-11 | 494 | 584 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-22 | 681 | 785 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-20 | 682 | 785 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.33E-15 | 687 | 784 | No hit | No description |
SMART | SM01019 | 2.7E-9 | 692 | 787 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.774 | 692 | 787 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-14 | 700 | 783 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 790 aa Download sequence Send to blast |
MLNPVYLEVP SGEVWEVEVV HSQGQICLGI GWQDFSDFYS ISCGHFLIFG YNARSHFNVT 60 IFDLSASEIE YPYSSAHGIH TPISHCHETR CAPKRDQSES DDTVEILEDI PRSQKAKAII 120 PDTVEHSVEN LCHCPLEQSS KRKRQERNAE DVVSVDMHVK RMKVEKLQED VASPSFIREG 180 QKSNKGCRMH KQQSDSVYGQ NKTVMDKERA VAYQRAKAFK SKNPFIISFM QPSYVFSPFH 240 LSIALNFAGK YFLENYGNLV LRVPGRGRGS WSVKCTTRGT NAKVHSGWKA FVLDNKLKCG 300 DVCVFEVIKG TRLFIDVTIF RAAGSTLMHK IVGEVPGGSD SKSKVIKTDS SVPCSQRKVV 360 HTKKLKQRTG GSYGFYSKIK EHGEGTEIEH SVEICGHCPL GQGSKRKRSE GKTKDDVSID 420 IHTKSIKVEN TQEDVASPSF TRKTKKSGES CRMDKQQSKM VYDKNKTVLD KERTVPYQRA 480 KTFKCENPYV MYFMQPSYVS TPYRLHISFL FARKYFLEEC GNLVLRVPGR GSWPVKYALG 540 ISKTQICFSW KAFVLDNKLK FGDVCVFELI KGTKPILDVT IFRAAESKAM HKIDGKLAGV 600 SDSKNKTIKT EKSIPCSQPK IVHSRKLNLE KKQKGDSDGL TSKIKEEFSE DTGKHVQQSK 660 SSCKGSEVAK EMVLAYQRAK AFTSENPFFI CFMQPSYVSS ASGPMQLSIT LSRARKFFAT 720 RHSDVVLKVS SKKSWAVKCI LGTANAKLTS GWKEFVLDNN LKVGDVCVFE RVSRSKLLFN 780 VIIFTSAEGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-15 | 195 | 788 | 18 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-15 | 195 | 788 | 18 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 162 | RKRQERNAEDVVSVDMHVKRMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613656.1 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1 | ||||
TrEMBL | A0A1S4BPH1 | 0.0 | A0A1S4BPH1_TOBAC; B3 domain-containing protein LOC_Os12g40080-like isoform X2 | ||||
STRING | XP_009613656.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-33 | B3 family protein |