PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613657.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 790aa    MW: 88888.1 Da    PI: 9.8332
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.6e-15229321498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + ps+v++   l++  +fa ++ +++ ++  l++  +   sW+vk+  + ++      +GWk Fv +n+Lk gD++vF++++ ++    v++fr
  XP_009613657.1 229 FMQPSYVFSPFHLSIALNFAGKYFLENYGNLVLRVPGRGRGSWSVKC--TTRGTNAKVHSGWKAFVLDNKLKCGDVCVFEVIKGTRLFIDVTIFR 321
                     6789*******************88888887888888888*******..66666677899********************987655556677766 PP
2B342.71e-13494584599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + ps+v++  rl ++  fa+++ +++ ++  l+l+ +   sW vk+    ++ ++ ++  Wk Fv +n+Lk gD++vF+l++ ++  l v++fr+
  XP_009613657.1 494 MQPSYVSTPYRLHISFLFARKYFLEE-CG-NLVLRVPGRGSWPVKYALGISKTQICFS--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRA 584
                     6799******************9884.44.8***************999999999998..*********************88777788888885 PP
3B351.22.2e-16695781794
                     .-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ps+v++     +l++  + a+++     ++ +++l+ +s +sW vk+i   +     lt+GWkeFv +n+Lk+gD++vF++++rs+  ++v
  XP_009613657.1 695 PSYVSSAsgpMQLSITLSRARKFFAT--RHSDVVLKVSSKKSWAVKCIL--GTANAKLTSGWKEFVLDNNLKVGDVCVFERVSRSKLLFNV 781
                     44444445567899999999999755..4558***************65..333346***********************88776664444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.941165IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-11565IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-6563No hitNo description
Gene3DG3DSA:2.40.330.101.9E-11576IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-20218323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18219322IPR015300DNA-binding pseudobarrel domain
CDDcd100178.87E-16224321No hitNo description
SMARTSM010194.3E-10226323IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237226323IPR003340B3 DNA binding domain
PfamPF023624.2E-12228321IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-18483584IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-18484584IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.265490585IPR003340B3 DNA binding domain
SMARTSM010192.6E-12493585IPR003340B3 DNA binding domain
CDDcd100175.05E-17494583No hitNo description
PfamPF023629.5E-11494584IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-22681785IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-20682785IPR015300DNA-binding pseudobarrel domain
CDDcd100174.33E-15687784No hitNo description
SMARTSM010192.7E-9692787IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774692787IPR003340B3 DNA binding domain
PfamPF023621.9E-14700783IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MLNPVYLEVP SGEVWEVEVV HSQGQICLGI GWQDFSDFYS ISCGHFLIFG YNARSHFNVT  60
IFDLSASEIE YPYSSAHGIH TPISHCHETR CAPKRDQSES DDTVEILEDI PRSQKAKAII  120
PDTVEHSVEN LCHCPLEQSS KRKRQERNAE DVVSVDMHVK RMKVEKLQED VASPSFIREG  180
QKSNKGCRMH KQQSDSVYGQ NKTVMDKERA VAYQRAKAFK SKNPFIISFM QPSYVFSPFH  240
LSIALNFAGK YFLENYGNLV LRVPGRGRGS WSVKCTTRGT NAKVHSGWKA FVLDNKLKCG  300
DVCVFEVIKG TRLFIDVTIF RAAGSTLMHK IVGEVPGGSD SKSKVIKTDS SVPCSQRKVV  360
HTKKLKQRTG GSYGFYSKIK EHGEGTEIEH SVEICGHCPL GQGSKRKRSE GKTKDDVSID  420
IHTKSIKVEN TQEDVASPSF TRKTKKSGES CRMDKQQSKM VYDKNKTVLD KERTVPYQRA  480
KTFKCENPYV MYFMQPSYVS TPYRLHISFL FARKYFLEEC GNLVLRVPGR GSWPVKYALG  540
ISKTQICFSW KAFVLDNKLK FGDVCVFELI KGTKPILDVT IFRAAESKAM HKIDGKLAGV  600
SDSKNKTIKT EKSIPCSQPK IVHSRKLNLE KKQKGDSDGL TSKIKEEFSE DTGKHVQQSK  660
SSCKGSEVAK EMVLAYQRAK AFTSENPFFI CFMQPSYVSS ASGPMQLSIT LSRARKFFAT  720
RHSDVVLKVS SKKSWAVKCI LGTANAKLTS GWKEFVLDNN LKVGDVCVFE RVSRSKLLFN  780
VIIFTSAEGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1519578818144B3 domain-containing transcription factor VRN1
4i1k_B1e-1519578818144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141162RKRQERNAEDVVSVDMHVKRMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613656.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A1S4BPH10.0A0A1S4BPH1_TOBAC; B3 domain-containing protein LOC_Os12g40080-like isoform X2
STRINGXP_009613656.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-33B3 family protein