PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613615.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CAMTA | ||||||||
Protein Properties | Length: 1107aa MW: 124243 Da PI: 6.056 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 182.4 | 5.2e-57 | 20 | 136 | 2 | 118 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl++ ei++iL+n++k++++ e+++rp+sgsl+L++rk++ryfrkDG+sw+kkkdgktv+E+he+LK g+++vl+cyYah+een++fqr XP_009613615.1 20 LEAQHRWLRPAEICEILKNYQKFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQR 114 5679******************************************************************************************* PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Leee+++ivlvhy+evk XP_009613615.1 115 RSYWMLEEEMSHIVLVHYREVK 136 *******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 83.558 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.9E-79 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.8E-50 | 21 | 134 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF01833 | 1.8E-4 | 519 | 597 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 6.72E-15 | 519 | 605 | IPR014756 | Immunoglobulin E-set |
PROSITE profile | PS50297 | 19.465 | 705 | 826 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.96E-14 | 705 | 814 | No hit | No description |
SuperFamily | SSF48403 | 1.41E-18 | 710 | 816 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 8.4E-19 | 711 | 820 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.1E-8 | 727 | 818 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0016 | 755 | 784 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.152 | 755 | 787 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 22 | 794 | 823 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 3.72E-7 | 923 | 980 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 50 | 929 | 951 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.346 | 931 | 959 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.18 | 932 | 950 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0042 | 952 | 974 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.285 | 953 | 977 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 5.0E-4 | 955 | 974 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1107 aa Download sequence Send to blast |
MADSRRYGLN AQLDIDQILL EAQHRWLRPA EICEILKNYQ KFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHSWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWML 120 EEEMSHIVLV HYREVKGNRT NFSRTREPQE AAPRFQETDE DVHSSEVDSS ASTKFYPNDY 180 QVNSQVTDTT SLSSVQASEY EDAESAYNQH PTSGFHSFLD AQPSMTQKAG EGLAVPYHPI 240 PFSRDDHQVQ FAGSSDMDFF SIAPGNKSGN TANTYIPSRN LDFPSWETTS VNNPAAYQSY 300 HFQPSSQSGA NNMTHEQGNT KTGQVFLNDF KRQERQNRID GLGDWQTSEG DAAFISKWSM 360 DQKLHPDLAS DHTIRSSAAF NVELHNSLEA SHILPSHQDK HPMQNELPSQ LSDPNVGGSL 420 NADLDHNLSI GVRTDHSSLK QPLLDGVLRE GLKKLDSFDR WMSKELEDVS EPHMQSNSSS 480 YWDNVGDDDG VDNSTIASQV QLDTYMLSPS LSQDQFFSII DFSPSWAFAG SEIKVLITGK 540 FLKSQPEVEK CSWACMFGEL EVPAEVIADG VLRCHTPIQK AGRVPFYITC CNRLACSEVR 600 EFEFRVTEGQ DADVANANSC SSSESLLHMR FGKLLSLEST VSLSSPPRSE DDVSHVCSKI 660 NSLLKEDDNE WEEMLNLTYE NNFMAEKVKD QLLQKLLKEK LRVWLLQKVA EGGKGPNVLD 720 EGGQGVLHFA AALGYDWAIP PTIAAGVSVN FRDVNGWTAL HWAASYGRER TVGFLISLGA 780 APGALTDPTP KHPSGRTPAD LASSNGHKGI AGYLAESSLS FHLSSLELKE MKQGENVQPF 840 GEAVQTVSER SATPAWDGDW PHGVSLKDSL AAVRNATQAA ARIHQVFRVQ SFQRKQLKEH 900 GGSEFGLSDE HALSLLALKT NKAGQHDEPV HTAAVRIQNK FRSWKGRRDY LLIRQRIIKI 960 QAHVRGHQVR NKYKNIIWSV GILEKVILRW RRKGSGLRGF KPEATLTEGS NTQDRPVQED 1020 DYDFLKEGRK QTEQRLQKAL ARVKSMVQYP EARDQYRRLL NVVSDMKDTT TTSDGAPSNS 1080 VEAADFGDDL IDLDDLLDDD TFMSTAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4hb5_A | 5e-12 | 706 | 814 | 20 | 122 | Engineered Protein |
4hb5_B | 5e-12 | 706 | 814 | 20 | 122 | Engineered Protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU170838 | 0.0 | GU170838.1 Solanum lycopersicum cultivar Rutgers calmodulin-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613615.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 3 isoform X1 | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | A0A1S3YKZ4 | 0.0 | A0A1S3YKZ4_TOBAC; calmodulin-binding transcription activator 3-like isoform X1 | ||||
STRING | XP_009613615.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2230 | 21 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |