PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24105.5 Da PI: 4.365 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3.1e-18 | 21 | 71 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +ykGVr +k +g+Wv+e+r p++ r r++lg+++tae+Aa+a +aa +l+ge XP_009613570.1 21 KYKGVRKRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAARAFDAAQFCLRGE 71 8*****999.*******999833...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.6E-30 | 21 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-12 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.24E-29 | 21 | 80 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-20 | 21 | 79 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-31 | 21 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.286 | 21 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MVKPTKSSDD ISSSSSSSSL KYKGVRKRKW GKWVSEVRLP NSRERIWLGS YDTAEKAARA 60 FDAAQFCLRG EAAKLNFPDN PPDILNGRSM SAAEIQMAAA RFANSDPEPQ ESISGPTDSS 120 GLSYSSLSSS SELLHAESPS TSISDGMVQP DGELTEMLLD SKFLDLFFSL GTANNEYDFG 180 TFSEFSDLTG DHFLPALTDM DSEKENYDGC SLHGSFLWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 21 | 78 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 28 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613570.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Refseq | XP_016500973.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 2e-52 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A1S4CII2 | 1e-159 | A0A1S4CII2_TOBAC; ethylene-responsive transcription factor ERF017-like | ||||
STRING | XP_009613570.1 | 1e-159 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 5e-46 | ERF family protein |
Publications ? help Back to Top | |||
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