PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009613460.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1720aa MW: 193099 Da PI: 4.9497

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009613460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.2e-19	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+++r+eL++klgLt+rq ++WF+ rR k+k+ XP_009613460.1 24 PKRQMKTPFQLETLERVYAMETYPSEATRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-18	9	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-17	12	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.293	20	80	IPR001356	Homeobox domain
SMART	SM00389	2.8E-18	22	84	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-16	24	78	IPR001356	Homeobox domain
CDD	cd00086	1.44E-14	25	81	No hit	No description
PROSITE profile	PS50827	15.731	510	569	IPR018501	DDT domain
SMART	SM00571	5.4E-20	510	569	IPR018501	DDT domain
Pfam	PF02791	3.2E-16	512	566	IPR018501	DDT domain
Pfam	PF05066	1.0E-11	691	758	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.0E-7	916	959	IPR028942	WHIM1 domain
Pfam	PF15613	4.4E-13	1088	1160	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1720 aa Download sequence Send to blast
MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA TRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNLT VSPREDLMVA EAASDHGSGS 120 ASRSGSGSGS SRFDNGDGMP TPPIRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE 180 FDELPPGAFG TPIEMEERRD HYRHSYDSKL YGSYDAKQIN VGSALSLSPA LTSGHREPAE 240 PKIVSDKYGQ IAAPYLYDSP VDGPSKNLPI MQGNGHFVRE CGVEGQSINV MSQQSRQGRF 300 PSPPMDNEFV PSNEDMLQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKREEQM 360 KKEMERQDRE RRKEEQRLMR EQQRKEERFQ REEKREMERR ERFLQKELLR VERKKQKEEL 420 RKEREAAKQK VAMERAMARR IAKESMELIE DERLELMDLA ASSKGLLSIA SLDYDTLQNL 480 ESFRESLCEF PPKSVQLKKP FSIQPWNASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF 540 LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY 600 LWGFDIRNWQ KHLTPLTWPE VLRQFALSAG FGPPLKKKRE RACLNDSDET KGCEDVVSTL 660 RSGSAAEKAV AIMQEKGFMS QRKSRHRLTP GTVKFAAYHV LALVGDKGLN VLDIAERIQK 720 SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIQ 780 RYANGFLSGQ NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEKCS ILDTCLVNGK 840 SKPSDEVAQQ IGVDVAGKDI VLTTDLFYAL FALFNVKALC SNCRKHYFSL AVDDLYIGIE 900 GSNPSQECSE IDESKAGQPW VQGLTEGEYS DLCVEERLKA LVALIGIANE GNSIRVILED 960 RLDAANALKK QMWAEAQLDK RRLKEETINK FNDSSFNAVV EGSQSPLGFP NSKNQGTAPT 1020 TLVKDESAVI VDNVQNHFES ISAEKSSVAQ ETFMGELAIQ PSGNTAERSR MQLKSFIGHK 1080 AEEMYAYRSL PLGQDRRRNR YWLLVASGSS EDPGSGRVFV ESPHGCWRLI DTEEAFDCLL 1140 ASLDTRGVRE SHLHIMLQKI EGPFKERVRR NMSYDDIIVQ HGNKCKNESS AASSSPASGA 1200 GADSPSSTIY GMGSDSWETS SSFKIELGKN EEERKNAFKR YQGFQSWMWK ECLSSSILCA 1260 MRYGKKRCLP LLGICGHCLD SYPSEEGNCP SCNRMSGKVD MNTDFPEQAM DSMDNLKIDY 1320 NKLAVSNACP LRVRLMKALL SFLEVYVPCE ALQSSWTEDC RKTWGMKLQN SLSPEDLLQI 1380 LTQLEGVIMR DYLSADYETA EELMGLCALS INAACESTYP GSVPQLPWIP QTTGAVALRL 1440 LELDASISYD PQQKTEAELK NKVDSLPNPS LGYASMKDLQ KVEPTEVDRD GPLREENWDY 1500 LSSMPSSSRS RQVVRGRGGG RPRGRLQKGS ASKIPESGRA GVRPIETLTQ VLIKQGETHG 1560 QRHVRGRRTV RKRRIEKKIV EEIQPDYLGD KGRRLTFVVP PRKHGREEFD MNVEGIEATN 1620 DDSNSMEAAD SDDCAPENTY EFNRSDLMEM SDEDQDGFAG DGNDDDNDDD DDDDDDDERY 1680 GSHGQNMARY GNMVEDDSDR DEDVNEDQES DSSVSRDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1720 aa Download sequence Send to blast

MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA TRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNLT VSPREDLMVA EAASDHGSGS  120
ASRSGSGSGS SRFDNGDGMP TPPIRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE  180
FDELPPGAFG TPIEMEERRD HYRHSYDSKL YGSYDAKQIN VGSALSLSPA LTSGHREPAE  240
PKIVSDKYGQ IAAPYLYDSP VDGPSKNLPI MQGNGHFVRE CGVEGQSINV MSQQSRQGRF  300
PSPPMDNEFV PSNEDMLQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKREEQM  360
KKEMERQDRE RRKEEQRLMR EQQRKEERFQ REEKREMERR ERFLQKELLR VERKKQKEEL  420
RKEREAAKQK VAMERAMARR IAKESMELIE DERLELMDLA ASSKGLLSIA SLDYDTLQNL  480
ESFRESLCEF PPKSVQLKKP FSIQPWNASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF  540
LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY  600
LWGFDIRNWQ KHLTPLTWPE VLRQFALSAG FGPPLKKKRE RACLNDSDET KGCEDVVSTL  660
RSGSAAEKAV AIMQEKGFMS QRKSRHRLTP GTVKFAAYHV LALVGDKGLN VLDIAERIQK  720
SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIQ  780
RYANGFLSGQ NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEKCS ILDTCLVNGK  840
SKPSDEVAQQ IGVDVAGKDI VLTTDLFYAL FALFNVKALC SNCRKHYFSL AVDDLYIGIE  900
GSNPSQECSE IDESKAGQPW VQGLTEGEYS DLCVEERLKA LVALIGIANE GNSIRVILED  960
RLDAANALKK QMWAEAQLDK RRLKEETINK FNDSSFNAVV EGSQSPLGFP NSKNQGTAPT  1020
TLVKDESAVI VDNVQNHFES ISAEKSSVAQ ETFMGELAIQ PSGNTAERSR MQLKSFIGHK  1080
AEEMYAYRSL PLGQDRRRNR YWLLVASGSS EDPGSGRVFV ESPHGCWRLI DTEEAFDCLL  1140
ASLDTRGVRE SHLHIMLQKI EGPFKERVRR NMSYDDIIVQ HGNKCKNESS AASSSPASGA  1200
GADSPSSTIY GMGSDSWETS SSFKIELGKN EEERKNAFKR YQGFQSWMWK ECLSSSILCA  1260
MRYGKKRCLP LLGICGHCLD SYPSEEGNCP SCNRMSGKVD MNTDFPEQAM DSMDNLKIDY  1320
NKLAVSNACP LRVRLMKALL SFLEVYVPCE ALQSSWTEDC RKTWGMKLQN SLSPEDLLQI  1380
LTQLEGVIMR DYLSADYETA EELMGLCALS INAACESTYP GSVPQLPWIP QTTGAVALRL  1440
LELDASISYD PQQKTEAELK NKVDSLPNPS LGYASMKDLQ KVEPTEVDRD GPLREENWDY  1500
LSSMPSSSRS RQVVRGRGGG RPRGRLQKGS ASKIPESGRA GVRPIETLTQ VLIKQGETHG  1560
QRHVRGRRTV RKRRIEKKIV EEIQPDYLGD KGRRLTFVVP PRKHGREEFD MNVEGIEATN  1620
DDSNSMEAAD SDDCAPENTY EFNRSDLMEM SDEDQDGFAG DGNDDDNDDD DDDDDDDERY  1680
GSHGQNMARY GNMVEDDSDR DEDVNEDQES DSSVSRDYSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613460.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X2
TrEMBL	A0A1S3XL25	0.0	A0A1S3XL25_TOBAC; homeobox-DDT domain protein RLT1-like
STRING	XP_009613460.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator