PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613405.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 366aa MW: 39976.4 Da PI: 5.9183 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.7e-20 | 186 | 235 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ l+g XP_009613405.1 186 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 235 59******9.**********965...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.20E-32 | 185 | 245 | No hit | No description |
SMART | SM00380 | 4.9E-37 | 186 | 249 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 186 | 243 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-23 | 186 | 244 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 186 | 244 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-14 | 187 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 187 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 209 | 225 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MAAAMDFWNS TPVDVHSTSE PITSGGELME ALEPFMKSAS SSPSNNFPPP ISPSSTFSSP 60 FPSSDFHSFP SFPTPTISYP YTSSFYQTPP QPMGSESCST STTTEAQIIS TGFSGYGMEH 120 PGSIGLNQLT PAQIQQIQAQ INFQTQQQQQ MIFHNGSHHH ASTMNLLGPK PVQMKQSGSP 180 PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YMLRGDFARL 240 NFPHLRHNGS LIGGEFGEYN PLHSSVDAKL KEICESLAQG KSIDSKKKRT SKGSSAAAVV 300 KMEEEESKVA EGGSESDGSG SGSGGSSPVT DLTFPEFTEE ESTWDMCSDN LMLQKYPSHE 360 IDWASL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 185 | 243 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX682668 | 0.0 | JX682668.1 Nicotiana tabacum cultivar NC89 ERF transcription factor 8 (ERF8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018629784.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 2e-85 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A1S4D1L3 | 0.0 | A0A1S4D1L3_TOBAC; ethylene-responsive transcription factor RAP2-4-like | ||||
STRING | XP_009613405.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 4e-65 | related to AP2 4 |
Publications ? help Back to Top | |||
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