PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613173.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 487aa    MW: 54780.2 Da    PI: 4.9631
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613173.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.31.1e-12177198526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++tG Ck+G++CkF+H+
  XP_009613173.1 177 VCPYFMKTGVCKFGSNCKFNHP 198
                     7********************8 PP

2zf-CCCH23.41e-07204224727
                     SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                     ++++ +G CkyG  CkF+H++
  XP_009613173.1 204 QYYLTSGGCKYGKACKFNHSR 224
                     59*****************95 PP

3zf-CCCH40.93.3e-13245269226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++C+F+H+
  XP_009613173.1 245 GEKECPYYMRTGSCKYGSNCRFHHP 269
                     7899********************9 PP

4zf-CCCH18.34.1e-06385407527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++f +tG Cky  +CkF+H++
  XP_009613173.1 385 DCSYFIKTGDCKYKFNCKFHHPK 407
                     7********************96 PP

5zf-CCCH36.29.9e-12429453327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C+f++r+G+Ck+G+ CkF H++
  XP_009613173.1 429 QTVCSFYSRYGICKFGPACKFDHPE 453
                     678********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.995172200IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6172199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7172199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-6176197IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10177198IPR000571Zinc finger, CCCH-type
SMARTSM003561.4202224IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.329204225IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5205224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4205225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624243271IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7243270IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-11245269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7245270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5249268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.723380408IPR000571Zinc finger, CCCH-type
SMARTSM003560.53380407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-5385408IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131426454IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6426453IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.32E-5427454IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9429453IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4431453IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEEAIEQQQF QNQNQSPKHT QEELGFESQT PQASLLPSDL NIENPNENQP NENDDEDEMA  60
MQIICEELRD LVLNQALDKE REKEDLHHLD PEENGKINEN EVENVEGNDE GWGDVGEYGD  120
YHYDDENRSG SVNGNDNEND GEKENGYEGD SKEGGGFNAN NRIKRKCSYP LRPDAQVCPY  180
FMKTGVCKFG SNCKFNHPSR RKYQYYLTSG GCKYGKACKF NHSREKGSIS PIAEFNFLGL  240
PIRPGEKECP YYMRTGSCKY GSNCRFHHPD PTTVAGADRS SGYNNGGAVP VQASSHPAAS  300
SWSSPRALND TAPYVPMMYP PTQGIPSPNT EWNGYQAPVY PTAEKRLPTP PAFAMNNPAT  360
KTNYYPRPLQ PLLVEEYPER PGQLDCSYFI KTGDCKYKFN CKFHHPKSRV PKANSSILNE  420
KGLPLRPDQT VCSFYSRYGI CKFGPACKFD HPENYVGSAS STECGFDQPQ QSQISLGWQG  480
RELDVDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-103HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613173.10.0PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X4
SwissprotQ9STM41e-111C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S4D5S60.0A0A1S4D5S6_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X3
STRINGXP_009613170.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-105C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]