PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 487aa MW: 54780.2 Da PI: 4.9631 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.3 | 1.1e-12 | 177 | 198 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++tG Ck+G++CkF+H+ XP_009613173.1 177 VCPYFMKTGVCKFGSNCKFNHP 198 7********************8 PP | |||||||
2 | zf-CCCH | 23.4 | 1e-07 | 204 | 224 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++ +G CkyG CkF+H++ XP_009613173.1 204 QYYLTSGGCKYGKACKFNHSR 224 59*****************95 PP | |||||||
3 | zf-CCCH | 40.9 | 3.3e-13 | 245 | 269 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG++C+F+H+ XP_009613173.1 245 GEKECPYYMRTGSCKYGSNCRFHHP 269 7899********************9 PP | |||||||
4 | zf-CCCH | 18.3 | 4.1e-06 | 385 | 407 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f +tG Cky +CkF+H++ XP_009613173.1 385 DCSYFIKTGDCKYKFNCKFHHPK 407 7********************96 PP | |||||||
5 | zf-CCCH | 36.2 | 9.9e-12 | 429 | 453 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f++r+G+Ck+G+ CkF H++ XP_009613173.1 429 QTVCSFYSRYGICKFGPACKFDHPE 453 678********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.995 | 172 | 200 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-7 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-6 | 176 | 197 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-10 | 177 | 198 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4 | 202 | 224 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.329 | 204 | 225 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-5 | 205 | 224 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 205 | 225 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.624 | 243 | 271 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-7 | 243 | 270 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-11 | 245 | 269 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-7 | 245 | 270 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 249 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.723 | 380 | 408 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.53 | 380 | 407 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-5 | 385 | 408 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.131 | 426 | 454 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-6 | 426 | 453 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.32E-5 | 427 | 454 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-9 | 429 | 453 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-4 | 431 | 453 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MEEAIEQQQF QNQNQSPKHT QEELGFESQT PQASLLPSDL NIENPNENQP NENDDEDEMA 60 MQIICEELRD LVLNQALDKE REKEDLHHLD PEENGKINEN EVENVEGNDE GWGDVGEYGD 120 YHYDDENRSG SVNGNDNEND GEKENGYEGD SKEGGGFNAN NRIKRKCSYP LRPDAQVCPY 180 FMKTGVCKFG SNCKFNHPSR RKYQYYLTSG GCKYGKACKF NHSREKGSIS PIAEFNFLGL 240 PIRPGEKECP YYMRTGSCKY GSNCRFHHPD PTTVAGADRS SGYNNGGAVP VQASSHPAAS 300 SWSSPRALND TAPYVPMMYP PTQGIPSPNT EWNGYQAPVY PTAEKRLPTP PAFAMNNPAT 360 KTNYYPRPLQ PLLVEEYPER PGQLDCSYFI KTGDCKYKFN CKFHHPKSRV PKANSSILNE 420 KGLPLRPDQT VCSFYSRYGI CKFGPACKFD HPENYVGSAS STECGFDQPQ QSQISLGWQG 480 RELDVDH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-103 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613173.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X4 | ||||
Swissprot | Q9STM4 | 1e-111 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A1S4D5S6 | 0.0 | A0A1S4D5S6_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X3 | ||||
STRING | XP_009613170.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-105 | C3H family protein |
Publications ? help Back to Top | |||
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