PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613172.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 509aa    MW: 57308 Da    PI: 5.0641
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.2e-12177198526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++tG Ck+G++CkF+H+
  XP_009613172.1 177 VCPYFMKTGVCKFGSNCKFNHP 198
                     7********************8 PP
2zf-CCCH31.33.5e-10222246327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C++++ +G CkyG  CkF+H++
  XP_009613172.1 222 QIECKYYLTSGGCKYGKACKFNHSR 246
                     568********************95 PP
3zf-CCCH40.93.5e-13267291226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++C+F+H+
  XP_009613172.1 267 GEKECPYYMRTGSCKYGSNCRFHHP 291
                     7899********************9 PP
4zf-CCCH18.24.4e-06407429527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++f +tG Cky  +CkF+H++
  XP_009613172.1 407 DCSYFIKTGDCKYKFNCKFHHPK 429
                     7********************96 PP
5zf-CCCH36.21e-11451475327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C+f++r+G+Ck+G+ CkF H++
  XP_009613172.1 451 QTVCSFYSRYGICKFGPACKFDHPE 475
                     678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.995172200IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6172199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6176197IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10177198IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4219246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474219247IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7223246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5224248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5225247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624265293IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7265292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7267292IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-11267291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5271290IPR000571Zinc finger, CCCH-type
SMARTSM003560.53402429IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.723402430IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-5407430IPR000571Zinc finger, CCCH-type
PfamPF146082.5407428No hitNo description
SMARTSM003563.4E-6448475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131448476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.4E-5449476IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9451475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4453475IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEEAIEQQQF QNQNQSPKHT QEELGFESQT PQASLLPSDL NIENPNENQP NENDDEDEMA  60
MQIICEELRD LVLNQALDKE REKEDLHHLD PEENGKINEN EVENVEGNDE GWGDVGEYGD  120
YHYDDENRSG SVNGNDNEND GEKENGYEGD SKEGGGFNAN NRIKRKCSYP LRPDAQVCPY  180
FMKTGVCKFG SNCKFNHPSR RKYQGTKEKG KQREESQERP GQIECKYYLT SGGCKYGKAC  240
KFNHSREKGS ISPIAEFNFL GLPIRPGEKE CPYYMRTGSC KYGSNCRFHH PDPTTVAGAD  300
RSSGYNNGGA VPVQASSHPA ASSWSSPRAL NDTAPYVPMM YPPTQGIPSP NTEWNGYQAP  360
VYPTAEKRLP TPPAFAMNNP ATKTNYYPRP LQPLLVEEYP ERPGQLDCSY FIKTGDCKYK  420
FNCKFHHPKS RVPKANSSIL NEKGLPLRPD QTVCSFYSRY GICKFGPACK FDHPENYVGS  480
ASSTECGFDQ PQQSQISLGW QGRELDVDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-102HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613172.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X3
SwissprotQ9STM41e-119C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S4D5S60.0A0A1S4D5S6_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X3
STRINGXP_009613170.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-114C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]