PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613171.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 510aa    MW: 57436.1 Da    PI: 5.0641
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613171.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.2e-12177198526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++tG Ck+G++CkF+H+
  XP_009613171.1 177 VCPYFMKTGVCKFGSNCKFNHP 198
                     7********************8 PP
2zf-CCCH31.33.5e-10223247327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C++++ +G CkyG  CkF+H++
  XP_009613171.1 223 QIECKYYLTSGGCKYGKACKFNHSR 247
                     568********************95 PP
3zf-CCCH40.93.5e-13268292226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++C+F+H+
  XP_009613171.1 268 GEKECPYYMRTGSCKYGSNCRFHHP 292
                     7899********************9 PP
4zf-CCCH18.24.4e-06408430527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++f +tG Cky  +CkF+H++
  XP_009613171.1 408 DCSYFIKTGDCKYKFNCKFHHPK 430
                     7********************96 PP
5zf-CCCH36.21e-11452476327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C+f++r+G+Ck+G+ CkF H++
  XP_009613171.1 452 QTVCSFYSRYGICKFGPACKFDHPE 476
                     678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.995172200IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6172199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6176197IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10177198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474220248IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4220247IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7224247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5225249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5226248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624266294IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7266293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7268293IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-11268292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5272291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.723403431IPR000571Zinc finger, CCCH-type
SMARTSM003560.53403430IPR000571Zinc finger, CCCH-type
PfamPF146082.5408429No hitNo description
SuperFamilySSF902298.5E-5408431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131449477IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6449476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.4E-5450477IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9452476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4454476IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEEAIEQQQF QNQNQSPKHT QEELGFESQT PQASLLPSDL NIENPNENQP NENDDEDEMA  60
MQIICEELRD LVLNQALDKE REKEDLHHLD PEENGKINEN EVENVEGNDE GWGDVGEYGD  120
YHYDDENRSG SVNGNDNEND GEKENGYEGD SKEGGGFNAN NRIKRKCSYP LRPDAQVCPY  180
FMKTGVCKFG SNCKFNHPSR RKYQQGTKEK GKQREESQER PGQIECKYYL TSGGCKYGKA  240
CKFNHSREKG SISPIAEFNF LGLPIRPGEK ECPYYMRTGS CKYGSNCRFH HPDPTTVAGA  300
DRSSGYNNGG AVPVQASSHP AASSWSSPRA LNDTAPYVPM MYPPTQGIPS PNTEWNGYQA  360
PVYPTAEKRL PTPPAFAMNN PATKTNYYPR PLQPLLVEEY PERPGQLDCS YFIKTGDCKY  420
KFNCKFHHPK SRVPKANSSI LNEKGLPLRP DQTVCSFYSR YGICKFGPAC KFDHPENYVG  480
SASSTECGFD QPQQSQISLG WQGRELDVDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-102HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613171.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X2
SwissprotQ9STM41e-120C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S4D5N10.0A0A1S4D5N1_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X2
STRINGXP_009613170.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-115C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]