PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009613130.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 1248aa MW: 136533 Da PI: 4.6185

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009613130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	414	435	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +C+ +F++k++L +H+ +H XP_009613130.1 414 HCDKCNVTFNDKDDLLQHQLSH 435 5******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	10.287	285	358	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	6.3E-5	293	338	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	8.83E-8	293	337	IPR016177	DNA-binding domain
PROSITE profile	PS50157	10.346	413	440	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0064	413	435	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.46E-5	414	479	No hit	No description
PROSITE pattern	PS00028	0	415	435	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.1	457	479	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.203	457	484	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	459	479	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1248 aa Download sequence Send to blast
MASVTVDSSS VTVADGPLHA ESIPTVDLRL LSQSELYSLS LCTPSAFNPR RDDDVIVPKI 60 DRSVFNESAG SRKQTYSRLR LAPASSASSS SSSALRSRTP HLRNSLHNPS SFNNDPENSQ 120 IVSLLKQLFG SGTKTNPNPS DLIHIRVDYS DSLSVPLPLT VRVPESSNVG SIGQKRKRGR 180 PRKNENENEK VGVGGGGGGV DKGTDVAIKD IVVYQNVDDN RDRDDKEMLN KDGEPVDLAV 240 LGTLEDPFGE ELRRRTEGLG SSEELLRFLG RLNGQWGSTR KKRRIVDAGE FGNVLPKGWK 300 LLLSIKRKEG RVWLHCRRYI SPSGRQFETC KEVSSYLLFL HGERNENLPT YAKSSGTVEI 360 TNTCALVSTS DLQDGSNNEG PLFHNSSPAV DHGELQVLLN FGELSEVQVG DLLHCDKCNV 420 TFNDKDDLLQ HQLSHRRRRS RNGQSITDGV IIKDGKFECQ FCHKTFEERH RYNGHVGAHV 480 KNQVKTADGS VSVNAGEFVE PVASSGAMLR ESMMLDSVVS LRNLSEIADV SADYGRKFAP 540 PGKIQEDDHM EIDDKLEGLS EALNTAPNKT NMCLSSEAIT CNNMGNIYCE TPCDALIADV 600 VAEGTNKGCH NQEGNSESCS PISLNEQTCV NTSKVIDCST IEEPEQEGLL CSNGIVDSCG 660 VSVEDGKFSP AVEESKVESD RFVDNESTTA LCSNVSVLDE NSLTNAKQVP CTEDHSRKNI 720 DVLNRVPFRA ETSKENRGLS STGTPSCDEE GSTVDYVKRV FPGCIGEQKP SSMMCNIEND 780 ECGSLVDSND NKLIMKEDSC SFVPHPDKHV NTAEKDVSDG SACFLEEPEQ QKGDKNGLFS 840 SACDKNSEVE AQLLNDSKTT TDEPKVSELQ GVSSNITGFP CNNHAVQKAD TSDIEKEKSL 900 AFCSLFPAMN LRAPCAEDHD TKVYRSTIEV NDQQRAANTL FSSTNVPEAS TKENTMNRSY 960 NNPLNGSKFD GLENSRHHDL NVVFGNSHVD LDANLNCTTF QLGMEETYGV QANLLGRLES 1020 DKQGEVGIDL SDSAFKGKTG DFESNFDTVF HSQLWDEQKV DEVGDSGKKI ITGFGCGGAK 1080 PNEDVMAGSI WRTGVENVMQ GDSADNSTSV VQSSNCFQTY DVLSDKVQSL FGENEKYDGN 1140 TGFDGLRSDR TGPVEYSFMS TQSLNSLQEE PRALPYDVDI EQGFNSSFWL GKDDLMPNLA 1200 GRNQVMLVCV WCRNEFYQEP NQLGAEAGSI GSMCPTCSGR ISGQFSFL

Sequence ? help Back to Top

Protein Sequence Length: 1248 aa Download sequence Send to blast

MASVTVDSSS VTVADGPLHA ESIPTVDLRL LSQSELYSLS LCTPSAFNPR RDDDVIVPKI  60
DRSVFNESAG SRKQTYSRLR LAPASSASSS SSSALRSRTP HLRNSLHNPS SFNNDPENSQ  120
IVSLLKQLFG SGTKTNPNPS DLIHIRVDYS DSLSVPLPLT VRVPESSNVG SIGQKRKRGR  180
PRKNENENEK VGVGGGGGGV DKGTDVAIKD IVVYQNVDDN RDRDDKEMLN KDGEPVDLAV  240
LGTLEDPFGE ELRRRTEGLG SSEELLRFLG RLNGQWGSTR KKRRIVDAGE FGNVLPKGWK  300
LLLSIKRKEG RVWLHCRRYI SPSGRQFETC KEVSSYLLFL HGERNENLPT YAKSSGTVEI  360
TNTCALVSTS DLQDGSNNEG PLFHNSSPAV DHGELQVLLN FGELSEVQVG DLLHCDKCNV  420
TFNDKDDLLQ HQLSHRRRRS RNGQSITDGV IIKDGKFECQ FCHKTFEERH RYNGHVGAHV  480
KNQVKTADGS VSVNAGEFVE PVASSGAMLR ESMMLDSVVS LRNLSEIADV SADYGRKFAP  540
PGKIQEDDHM EIDDKLEGLS EALNTAPNKT NMCLSSEAIT CNNMGNIYCE TPCDALIADV  600
VAEGTNKGCH NQEGNSESCS PISLNEQTCV NTSKVIDCST IEEPEQEGLL CSNGIVDSCG  660
VSVEDGKFSP AVEESKVESD RFVDNESTTA LCSNVSVLDE NSLTNAKQVP CTEDHSRKNI  720
DVLNRVPFRA ETSKENRGLS STGTPSCDEE GSTVDYVKRV FPGCIGEQKP SSMMCNIEND  780
ECGSLVDSND NKLIMKEDSC SFVPHPDKHV NTAEKDVSDG SACFLEEPEQ QKGDKNGLFS  840
SACDKNSEVE AQLLNDSKTT TDEPKVSELQ GVSSNITGFP CNNHAVQKAD TSDIEKEKSL  900
AFCSLFPAMN LRAPCAEDHD TKVYRSTIEV NDQQRAANTL FSSTNVPEAS TKENTMNRSY  960
NNPLNGSKFD GLENSRHHDL NVVFGNSHVD LDANLNCTTF QLGMEETYGV QANLLGRLES  1020
DKQGEVGIDL SDSAFKGKTG DFESNFDTVF HSQLWDEQKV DEVGDSGKKI ITGFGCGGAK  1080
PNEDVMAGSI WRTGVENVMQ GDSADNSTSV VQSSNCFQTY DVLSDKVQSL FGENEKYDGN  1140
TGFDGLRSDR TGPVEYSFMS TQSLNSLQEE PRALPYDVDI EQGFNSSFWL GKDDLMPNLA  1200
GRNQVMLVCV WCRNEFYQEP NQLGAEAGSI GSMCPTCSGR ISGQFSFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613130.1	0.0	PREDICTED: uncharacterized protein LOC104106314
TrEMBL	A0A1S3Z9B1	0.0	A0A1S3Z9B1_TOBAC; uncharacterized protein LOC107784349
STRING	XP_009613130.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19