PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613089.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 366aa    MW: 40095.9 Da    PI: 9.4253
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613089.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.69.7e-40176253178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +C vegC+ dls+akeyhr+h+vC+ hsk+p+v++ g e+rfCqqCsrfh+ls+fDe+krsCrrrL++hn+rrrk+q+
  XP_009613089.1 176 RCLVEGCNLDLSSAKEYHRKHRVCHSHSKCPKVIIGGAERRFCQQCSRFHSLSDFDEKKRSCRRRLSDHNARRRKPQQ 253
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-31170238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.752174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-37175256IPR004333Transcription factor, SBP-box
PfamPF031104.0E-30177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEWNVKWEWG DLMMFGSEAC GSPKELQLTD WGVDEEGELD RRSFNLSGFG SSVGGYGSDM  60
GRSSSIKSSI SASTDSSPNE TLKASSFTFE ASNGSQGNLG KDVEQCRDEL SRCSPPMEAL  120
IGYDGPLTGL KLGKRTVESN SGGSSVKLPS SSSIPVSSVS AAKKKKSSSQ NALIPRCLVE  180
GCNLDLSSAK EYHRKHRVCH SHSKCPKVII GGAERRFCQQ CSRFHSLSDF DEKKRSCRRR  240
LSDHNARRRK PQQETIQFNS TRLSSWFYDN SKSMNFVFNN GLLLQSKTTA DSTWGTSEVP  300
KFTITRGLTS KPYKAGSINV QSLVGEIKLP GATKMQTDAS KGTTTEVFSQ GALWISRGVG  360
KLSEYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-241772501184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613083.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_009613084.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_009613085.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_009613086.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_009613087.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_009613088.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_009613090.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X2
RefseqXP_018629721.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_018629722.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
TrEMBLA0A1S4CUB50.0A0A1S4CUB5_TOBAC; squamosa promoter-binding-like protein 12 isoform X2
STRINGXP_009613083.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-50squamosa promoter binding protein-like 2