PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 643aa MW: 71586.9 Da PI: 8.6896 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 392 | 429 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_009613053.1 392 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 429 554459******************************88 PP | |||||||
2 | BELL | 119.8 | 1.3e-38 | 255 | 326 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqe q+kkakL+++leeV++rY+qy++q+q+++ssFe+vag+gsak+Yt+lAl+aiS++FrcLkdai++qi XP_009613053.1 255 QRQEFQMKKAKLVTMLEEVEQRYRQYHHQMQIIVSSFEQVAGIGSAKSYTQLALHAISKQFRCLKDAIVGQI 326 699********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 8.1E-60 | 179 | 324 | IPR006563 | POX domain |
Pfam | PF07526 | 4.7E-48 | 184 | 323 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 370 | 433 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.56E-11 | 373 | 434 | No hit | No description |
SMART | SM00389 | 4.2E-10 | 373 | 437 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 374 | 440 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-29 | 376 | 439 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.5E-18 | 390 | 429 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MYYQGTSDNI HQAADGNIQT LYLMNPNYIH QGYTDTQQQH QHQQQIMSHA PLQQAQQHFV 60 GVPLPAVSLH DQNHAQLIHR LWNQSGGGGG SGNGSHHQSQ IIPSSTVVSA TSCGGTTTDL 120 ASQLGFQRSI TMSPTQQQQQ QQQQRGGLSL SLSPQQQQIR FNNISAQNQV GSNINRGLDG 180 ISSMVLGSKY LKAAQELLDE VVNVGKCIKG SELEKEEFIN KESILPLASD VNTTNSGGES 240 SSKQKNGVAE LTTAQRQEFQ MKKAKLVTML EEVEQRYRQY HHQMQIIVSS FEQVAGIGSA 300 KSYTQLALHA ISKQFRCLKD AIVGQIKATS KSLGEEDQSL GGKIEGSRLK FVDHHLRQQR 360 ALQQLGMMQP NAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKIMLAK QTGLTRSQVS 420 NWFINARVRL WKPMVEEMYL EEVKNNQEQN TSSEENKNKN ELNKEKVVSK SSAPQENGTP 480 TEISTSTIST SPTAGGSFQA VQAHNFSFIG SLNMENNTIA KKPRNHDMHN SSPSSILSSV 540 DMAETKARNH QSNKRFNPLM DATAAYTMGE FGRFNPHEQM AATNFHGNNG VSLTLGLPPN 600 SENLSQQNYQ IEFNRMSYEN IDFQNKRFPS QLLPDFVAGN LGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 379 | 437 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 379 | 437 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU686380 | 0.0 | EU686380.1 Solanum palustre BEL5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613053.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_018629670.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A1S4DD34 | 0.0 | A0A1S4DD34_TOBAC; BEL1-like homeodomain protein 1 | ||||
STRING | XP_009613053.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-103 | BEL1-like homeodomain 1 |