PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613034.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 707aa    MW: 77708.7 Da    PI: 5.5542
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4371.4e-1333417061374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL arl+    + +++++a +p +  + ns e l++++++++++P++k
  XP_009613034.1 341 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLTAtlaTKPNTSSAPKPFNPFPPNSLEILKIYQILYQACPYVK 435
                     68***************************************************98443456677777777777778******************* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     f+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l+vpfef++ v ++le
  XP_009613034.1 436 FAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVKETGRCLTELAHSLHVPFEFHP-VGEQLE 525
                     *********************************************************....9**************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     dl++++++ + gEalaVn+v +lhr++       +++ ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s++r
  XP_009613034.1 526 DLKPHMFNRRIGEALAVNSVNRLHRVP------VNCIGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSSQR 614
                     **************************9......444557******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k+E+ ++++ei+n+v+cegaer+ rhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ dgy++ e++g+l+lgW+dr+++++SaWr
  XP_009613034.1 615 AKLEQYIFAPEIMNIVSCEGAERVVRHERLEKWRRLMEGKGFKGVALSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGWQDRAILAASAWR 706
                     *******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.901315686IPR005202Transcription factor GRAS
PfamPF035144.8E-131341706IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MSTVMNNSLS ARMGSLKNDI KSEVGSLKSE IGSFKSENSY SKLPLDESSL ASSESKKVTP  60
VTSDFELNCG SLGPTSLSFP TLKFVVDDDV EIQSPDNSIW ESFFADQLEG DFMISSPVRN  120
LPSPQPASSF STTTHSNNNY GHHQGIHGQS MMMCSPPRSP LGPNYHSSNK GKGLSPLQKV  180
FNSPNNQFMQ IESFNLPALE SFLDDDYDKE EDLASSYSTL KVSGSGVAGS SSESFDVLSV  240
VPDLLECLGA LPNSSSNAPG SFMGSLLGDT SAVPDDEIFQ TGSIAPLSQQ LQQERQHEKQ  300
QKQRPITHAQ PPTAQQQHTQ IINHNLVVAA PDQELDSGLQ LVHLLLACAE AVSKEDYMLA  360
RRYLHHLNRV VTPIGDSMQR VASCFTEALT ARLTATLATK PNTSSAPKPF NPFPPNSLEI  420
LKIYQILYQA CPYVKFAHFT ANQAIFEAFE AEERVHVIDL DILQGYQWPA FMQALAARPG  480
GAPFLRITGV GPSPEAVKET GRCLTELAHS LHVPFEFHPV GEQLEDLKPH MFNRRIGEAL  540
AVNSVNRLHR VPVNCIGNLL AMIRDQAPNI VTIVEQEASH NGPYFLGRFL EALHYYSAIF  600
DSLDATFPAD SSQRAKLEQY IFAPEIMNIV SCEGAERVVR HERLEKWRRL MEGKGFKGVA  660
LSANAVTQSK ILLGLYSCDG YKLTEDNGCL LLGWQDRAIL AASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-9734870526378Protein SCARECROW
5b3h_A3e-9734870525377Protein SCARECROW
5b3h_D3e-9734870525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613034.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A1S4AB590.0A0A1S4AB59_TOBAC; DELLA protein RGL1-like
STRINGXP_009613034.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-97RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]