PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009612973.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 477aa MW: 53233 Da PI: 5.6077

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009612973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112	4.1e-35	19	109	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+ll++ XP_009612973.1 19 FLLKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFMKDQKHLLKN 104 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_009612973.1 105 IHRRK 109 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.9E-60	15	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.3E-38	15	108	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.76E-36	15	108	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.9E-31	19	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-20	19	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-20	57	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	58	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-20	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MDVISATAAA GGGGGPAPFL LKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT 60 YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFMKDQKH LLKNIHRRKP IHSHSHPPGS 120 TVDPERAAFE EEIDKLSREK SGLEANVLRF RQQHSTAKLQ LEEMTVRVGS IEQRQESLLT 180 FVEKAVLNPD FVERLAQKLE SMDISAFSKK RRLPQVDSSQ PVQENMLVDN HSSSRVEFGN 240 LCNQDFSNKL RLELSPAVSD INVVSCSTQS SNEDGGSPHR RISEGWSREV QLRTGGVIYT 300 PEAIELSDTG TSFTLKMDSS LPRAASNVES SRLHSLPQSL ISNEEVDGHI SCQLNLSLAS 360 CLSQVDKNQH SVRMPQIGQE IGKHSESQSD ASGKSPPNDD KTLPPSYDAT GNKQGAATTP 420 VRVNDVFWEQ FLTERPGCSD NEEASSSFKG NSYDEQDDRK SNQGVASNTR KVEHLTL

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MDVISATAAA GGGGGPAPFL LKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT  60
YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFMKDQKH LLKNIHRRKP IHSHSHPPGS  120
TVDPERAAFE EEIDKLSREK SGLEANVLRF RQQHSTAKLQ LEEMTVRVGS IEQRQESLLT  180
FVEKAVLNPD FVERLAQKLE SMDISAFSKK RRLPQVDSSQ PVQENMLVDN HSSSRVEFGN  240
LCNQDFSNKL RLELSPAVSD INVVSCSTQS SNEDGGSPHR RISEGWSREV QLRTGGVIYT  300
PEAIELSDTG TSFTLKMDSS LPRAASNVES SRLHSLPQSL ISNEEVDGHI SCQLNLSLAS  360
CLSQVDKNQH SVRMPQIGQE IGKHSESQSD ASGKSPPNDD KTLPPSYDAT GNKQGAATTP  420
VRVNDVFWEQ FLTERPGCSD NEEASSSFKG NSYDEQDDRK SNQGVASNTR KVEHLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-24	1	108	12	129	Heat shock factor protein 1
5d5v_B	3e-24	1	108	12	129	Heat shock factor protein 1
5d5v_D	3e-24	1	108	12	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612973.1	0.0	PREDICTED: heat stress transcription factor A-5
Refseq	XP_016456461.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-165	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A1S3YVW1	0.0	A0A1S3YVW1_TOBAC; heat stress transcription factor A-5-like
STRING	XP_009612973.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-167	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]