PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612923.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 599aa    MW: 68188.8 Da    PI: 5.2698
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-2376176198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt+sd  ++  l++ +k a+++       +  ++ +++l+++d++g++W++k+ ++++++r++lt+GW+ Fv +++L +gD vvF   +++
  XP_009612923.1  76 FCKALTTSDIKSNWGLSVHRKDANKCfppldmmQ--EKPTQELIVNDLQGNEWRFKHVFQGQPRRHLLTNGWSTFVTSKKLLAGDLVVFL--RDE 166
                     99*****************************643..445569************************************************..569 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     +++l+v+++r
  XP_009612923.1 167 TGKLHVGIRR 176
                     999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-3569188IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-2771178IPR015300DNA-binding pseudobarrel domain
CDDcd100175.87E-1975176No hitNo description
SMARTSM010191.5E-1676178IPR003340B3 DNA binding domain
PROSITE profilePS5086312.80276178IPR003340B3 DNA binding domain
PfamPF023621.7E-2076176IPR003340B3 DNA binding domain
PfamPF065073.0E-5201263IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MDQLEQSSNL EWIQGLQLSH LPRKILCRVL HIRLLVEHDT EEVYAETILL PNQEQNEPST  60
PEFCPLEPPR PQYQSFCKAL TTSDIKSNWG LSVHRKDANK CFPPLDMMQE KPTQELIVND  120
LQGNEWRFKH VFQGQPRRHL LTNGWSTFVT SKKLLAGDLV VFLRDETGKL HVGIRRLSYQ  180
CNSVGSSTFS RQSMEGVLAV ASHAFATRSL FSVYYKPCYN RSSQFIMSLS NYFEGGNHGP  240
GVGTISRTQH SSLDSHVKRT SGMDQMSFPQ GQHKTNLLLE EDQYMQDSEA ISNSARPTMM  300
ALEIGQQSVE SLNNIHHIED SVLQPHTAVA RENNERFIPN ETVAIQAQDE NFDELFKETD  360
FPDFVNTSLD TITLDWDSDL RSTIQDFDEW LEETNPPGLQ TCSEDHSRQT SSILEQPTSS  420
QVMSISSTPS RIPYEGPGRG DEQVPWGSYQ VARRCLPILN RVVSRYPDSL VNFKVTSSIF  480
QSVCLEILAE LVYFLDNLTV MNLSKDQFNV AGQHLWDLKL SGIELGWLEK RLAHIDGAFS  540
MENVLQRRQV FTLRMGDTLA TFRQLDEELG CINKELHQLS LKVGPNPPMR FHPVLEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A7e-71126249310Auxin response factor 1
4ldw_A7e-71126249310Auxin response factor 1
4ldw_B7e-71126249310Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0846690.0AB084669.1 Nicotiana tabacum NtWAF mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612922.10.0PREDICTED: uncharacterized protein LOC104106139 isoform X3
RefseqXP_009612923.10.0PREDICTED: uncharacterized protein LOC104106139 isoform X3
TrEMBLA0A1S4DE490.0A0A1S4DE49_TOBAC; Auxin response factor
STRINGXP_009612920.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-76auxin response factor 11