PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612535.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 635aa MW: 72360.8 Da PI: 6.5155 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355.5 | 8e-109 | 257 | 630 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + lL++cA+a+ss d++ a++lL r+++++s++gd ++Rla+y+++AL+arl+++++ y a+++s+ s ++ l+a+k+f ++P+ +s++ XP_009612535.1 257 RGLLTQCAQAMSSYDTRTANELLLRIRQHSSSHGDETERLAHYLANALEARLSGTGTASYTAFASSRIS---AAHILKAYKAFITACPFKLMSNI 348 679***************************************************999999999888888...999******************** PP GRAS 97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 aN+ I + + g +++HiiDf+i +G+QWp+L+q+L+ R ++p +lRiTgv+ p++g +e++e tg+rL+k++++++vpfef + +ak++ XP_009612535.1 349 FANKYIKKLITGGapRTIHIIDFGILYGFQWPCLIQSLSaLRHGEPIKLRITGVELPQPGfrPAERVEDTGRRLKKYCDRFNVPFEFIA-IAKKW 442 **********998899**********************967778888************9*****************************.7**** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 e+++leeL+++++++l+Vn+ ++l +++de+v +s+rd vL+l+++++P+++++ + +n++ Fl+rf eal ++s+lfd++ea+lpre+e+ XP_009612535.1 443 ESITLEELQIDRNDVLVVNSLYRLGNIPDETVVPTSPRDVVLDLIRRIRPDMFIHGVVNGTYNTPFFLTRFREALFHFSTLFDMFEATLPREDED 537 *********************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ E+e+++r+++nv+aceg+er+er et+++W+ r +aGF+++pl++++++ ++ +r+ + + ++v+e+++++++gWk+r ++++S+W+ XP_009612535.1 538 RKLFEEEVFARDAMNVIACEGTERVERPETYKQWQLRCARAGFRQLPLDQEIVNFVSNKVRREYHKDFSVDEDRQWMLQGWKGRVVYALSCWK 630 ***************************************************************9888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.353 | 230 | 610 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-106 | 257 | 630 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MEAIFQEQLF PGADAFIFRH PSSREDVVVQ NGSTIFNRPS FEDYPYVLSN VREGDSSPKE 60 EGEGERDYSD AMYKYISQML MEEEDLEYKP CMFRDCMALQ AAEKYFSDVL HGSENITISP 120 QFSAIIPQDK VSSSCPDLSN TSSYSIESPQ SGLNFESPVS VKSLPDVSNG LNHGSSGLRE 180 KKNHHRQDDD HQRSNKQLAT FAADESEPLE MYDNVLLLCP NNPCGPPNEV KKPTKVGRSR 240 SGGKKHSSSK KEIVDLRGLL TQCAQAMSSY DTRTANELLL RIRQHSSSHG DETERLAHYL 300 ANALEARLSG TGTASYTAFA SSRISAAHIL KAYKAFITAC PFKLMSNIFA NKYIKKLITG 360 GAPRTIHIID FGILYGFQWP CLIQSLSALR HGEPIKLRIT GVELPQPGFR PAERVEDTGR 420 RLKKYCDRFN VPFEFIAIAK KWESITLEEL QIDRNDVLVV NSLYRLGNIP DETVVPTSPR 480 DVVLDLIRRI RPDMFIHGVV NGTYNTPFFL TRFREALFHF STLFDMFEAT LPREDEDRKL 540 FEEEVFARDA MNVIACEGTE RVERPETYKQ WQLRCARAGF RQLPLDQEIV NFVSNKVRRE 600 YHKDFSVDED RQWMLQGWKG RVVYALSCWK PAQQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-40 | 262 | 631 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-40 | 262 | 631 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-40 | 262 | 631 | 24 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ449940 | 0.0 | DQ449940.1 Nicotiana tabacum GRAS1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018629548.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
Swissprot | Q9SNB8 | 1e-173 | SCL30_ARATH; Scarecrow-like protein 30 | ||||
TrEMBL | A0A1S4CH19 | 0.0 | A0A1S4CH19_TOBAC; scarecrow-like protein 30 | ||||
STRING | XP_009612535.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 1e-164 | GRAS family protein |
Publications ? help Back to Top | |||
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