PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612305.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 326aa MW: 36784.8 Da PI: 7.8381 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.2 | 4.6e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ f+ G C G+ C F+H+ XP_009612305.1 3 KRVLCK-FFVHGACLKGEYCEFSHD 26 99****.7777*************5 PP | |||||||
2 | zf-CCCH | 21.5 | 4.2e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C yG+rC++ H+ XP_009612305.1 34 VCAYYQK-GLCAYGSRCRYEHV 54 59*****.***********997 PP | |||||||
3 | zf-CCCH | 22.2 | 2.4e-07 | 139 | 159 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ a+ G C++G++C+++Hg XP_009612305.1 139 ICS-LAAAGNCPRGEKCPYIHG 159 677.8999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.544 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.004 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.112 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.12 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 139 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 139 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 5.16E-12 | 195 | 267 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.6E-9 | 196 | 262 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00147 | 202 | 262 | No hit | No description |
PROSITE profile | PS50089 | 12.268 | 203 | 261 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 3.7E-6 | 203 | 260 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 1.3E-6 | 203 | 260 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 227 | 236 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 5.4 | 290 | 318 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.948 | 290 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MSKRVLCKFF VHGACLKGEY CEFSHDWKDP PNNVCAYYQK GLCAYGSRCR YEHVEVSQQH 60 SPPSSSAPAQ HLLSNPSPTT LSSGMLADGA GLSAEYLTSG RPFYPPNQAA WSESSENHHV 120 EEIENFVELK RINPADQSIC SLAAAGNCPR GEKCPYIHGD LCPICAKHCL HPFRPQEREE 180 HMKTCEKRQK HLDLLKHSQE IECCVCLERV LSKTTATQRK FGILSECDHP FCISCIRNWR 240 SGSPSSGIDI NSTFRTCPVC RKLSYFVIPS VIWYSTKEEK QDILDSYKTK LRSIDCKHFD 300 FGNGTCPFGA SCFYKGTVLF HNGCFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612305.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X4 | ||||
Swissprot | E0X9N4 | 1e-137 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A1S3XAW6 | 0.0 | A0A1S3XAW6_TOBAC; zinc finger CCCH domain-containing protein 69-like isoform X2 | ||||
TrEMBL | A0A1S3XB50 | 0.0 | A0A1S3XB50_TOBAC; zinc finger CCCH domain-containing protein 69-like isoform X1 | ||||
STRING | XP_009612302.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-132 | C3H family protein |
Publications ? help Back to Top | |||
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