PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612213.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 303aa    MW: 32972 Da    PI: 7.952
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR28.33.6e-094321240
             TCR 12 kClkkYCeCfaagkkCseeCkCedCkNke 40
                     C+  YCeCfaag++C e C C+dC+Nk 
  XP_009612213.1  4 TCQCSYCECFAAGVYCVEPCACQDCFNKP 32
                    5999***********************96 PP
2TCR52.87.7e-1779117139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  XP_009612213.1  79 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 117
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163433.1951119IPR005172CRC domain
PfamPF036382.0E-5431IPR005172CRC domain
SMARTSM011140.0013534IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011147.5E-1879120IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-1281117IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
SYFTCQCSYC ECFAAGVYCV EPCACQDCFN KPIHEDTVLA TRKQIESRNP LAFAPKVIRT  60
TDSISETGDD SSKTPASARH KRGCNCKKSG CLKKYCECYQ GGVGCSINCR CEGCKNAFGR  120
KDGSIFIGTD GDAEEEETDA YEKSIVDRTS HKNLVQSDIE QNPDSAPPAT PLSFGRPPMQ  180
LPFSLKNKPP RSSFLSIGSS SSGGIYGAGQ GIGRLNLFQP QPKFDKPFES VQVEEDEIMP  240
EILQGTKSPV SGIKTASPNR KRVSPPHCDY GNSHSHSHSP GRRSSRKLIL QSIPSFPSLT  300
PNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-13911625120Protein lin-54 homolog
5fd3_B4e-13911625120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-85HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612213.20.0PREDICTED: protein tesmin/TSO1-like CXC 2
SwissprotQ9LUI31e-104TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLA0A1S4BTP40.0A0A1S4BTP4_TOBAC; protein tesmin/TSO1-like CXC 2 isoform X3
TrEMBLA0A1S4BTT60.0A0A1S4BTT6_TOBAC; protein tesmin/TSO1-like CXC 2 isoform X1
STRINGXP_009612213.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-96TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  2. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  3. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]