PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009612000.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 189aa MW: 20987.9 Da PI: 8.4939

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009612000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	227.8	2.7e-70	9	163	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 sse+vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvn+ q l+ ++ l+++ + + k ++ +s++++++ + XP_009612000.1 9 PSSERVCYVHCNFCNTMLAVSVPCNSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQD-LQRQQSSIIEDASKACGS---------SSSTNYHRFS 93 689*************************************************999.566555544444443333.........3344444444 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_009612000.1 94 AIATTPEDDQPRTMP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 163 555556666777777.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.0E-74	10	163	IPR006780	YABBY protein
SuperFamily	SSF47095	3.67E-9	102	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.6E-5	111	157	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSLDITYSPS SERVCYVHCN FCNTMLAVSV PCNSMMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQDLQRQQ SSIIEDASKA CGSSSSTNYH RFSAIATTPE DDQPRTMPIR PPEKRQRVPS 120 AYNRFIKEEI QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLKLEGNKQ AKLDHAVAGE 180 GPQKSIGLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612000.1	1e-141	PREDICTED: axial regulator YABBY 5-like isoform X4
Swissprot	Q9XFB0	1e-74	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J6KYN5	1e-133	A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRING	XP_009611997.1	1e-132	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-72	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]