PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009611999.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 190aa    MW: 21116 Da    PI: 8.4939
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009611999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY234.42.6e-7291645170
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                      sse+vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvn+    q l+ ++ l+++ + ++ e+  ++          ++s++++++ +
  XP_009611999.1   9 PSSERVCYVHCNFCNTMLAVSVPCNSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQD-LQQRQQSSIIEDASKA--------CGSSSSTNYHRFS 94 
                     689***************************************************999.5666666665554433........3344444555555 PP

           YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      + +  +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_009611999.1  95 AIATTPEDDQPRTMP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164
                     555666677777777.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.8E-7410164IPR006780YABBY protein
SuperFamilySSF470953.67E-9103157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.6E-5112158IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSLDITYSPS SERVCYVHCN FCNTMLAVSV PCNSMMTIVT VRCGHCANLL SVNIGSLLQS  60
LPLQDLQQRQ QSSIIEDASK ACGSSSSTNY HRFSAIATTP EDDQPRTMPI RPPEKRQRVP  120
SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLEGNK QAKLDHAVAG  180
EGPQKSIGLY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611999.11e-142PREDICTED: putative axial regulator YABBY 2 isoform X3
SwissprotQ9XFB02e-75YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A1J6KYN51e-131A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRINGXP_009611997.11e-132(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-72YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]