PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009611533.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 391aa    MW: 45077.8 Da    PI: 5.7655
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009611533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.63.4e-23281364186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k+ev++L+ +r  +++++ +g +k+  Weev++ ++++g+ r+pk+Ckekwen+nk+yk++ ++ k    ++ ++cpyf++l+
  XP_009611533.1 281 RWPKSEVQDLVSIRIALDHKFLKG-AKGSVWEEVADGLAKKGYIRTPKKCKEKWENINKYYKRTIDSGKAC-LRNYRSCPYFRELD 364
                     8**********************9.99*****************************************997.456679*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.073274337IPR017877Myb-like domain
CDDcd122037.04E-20280343No hitNo description
PfamPF138374.9E-18280364No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MELLTDGDGH RSNEVTTFPN NSLTPFPVST NAVYSHPASV IPPPPEIDHL PVSPARKLRP  60
VRCGNGRSYV DMVDSSCDMD ETLMNCSSDL GGFFNQFSAQ NANTVIPREC VFEFSAVQQM  120
KSVFDADCFN LISQARILEA EFSSSSDDSE SSEAIEERLN RKRKRERRKS LKLYLEDMVR  180
RLMDKQEQMH KQLIEMIEKK EQERIIREEG WKQQEIERAK RDEEVRAEET SRNLALISFL  240
ENLLDDEFQI PKSSEMSSRV KDEGEVHGHE ADVRSDPCNR RWPKSEVQDL VSIRIALDHK  300
FLKGAKGSVW EEVADGLAKK GYIRTPKKCK EKWENINKYY KRTIDSGKAC LRNYRSCPYF  360
RELDILYKSH LLTQGTGDCV KSETESKMVE E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611533.10.0PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A1S3XI160.0A0A1S3XI16_TOBAC; trihelix transcription factor GT-2-like
STRINGXP_009611533.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128841620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.13e-35Trihelix family protein