PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009611380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 433aa MW: 47249.6 Da PI: 8.5931 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.5e-11 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_009611380.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73 6899********************97 PP | |||||||
2 | zf-CCCH | 40.1 | 5.9e-13 | 93 | 118 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_009611380.1 93 GQPECQYYLKTGTCKFGATCKFHHPK 118 5799********************96 PP | |||||||
3 | zf-CCCH | 39.4 | 9.9e-13 | 140 | 164 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_009611380.1 140 EAECAYYMRTGQCKFGSTCKFHHPQ 164 689********************97 PP | |||||||
4 | zf-CCCH | 36.6 | 7.6e-12 | 295 | 319 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G+ C+F+H++ XP_009611380.1 295 QPECQFYMKTGDCKFGAVCRFHHPR 319 799********************96 PP | |||||||
5 | zf-CCCH | 40.2 | 5.8e-13 | 339 | 365 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_009611380.1 339 PGEPLCIFYSRYGICKFGPSCKFDHPM 365 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.483 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-8 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.629 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-10 | 93 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 94 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-5 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 139 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 140 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 143 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-4 | 292 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.244 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 295 | 319 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.41E-5 | 295 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 298 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 338 | 365 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 338 | 366 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 340 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 341 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 343 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVREGEP DCSYYIRTGL 60 CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPKDK 120 AGIAGRVTLN VLGYPLRPNE AECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPP 180 VPSATTPGQL SYPLSRGSFI PGARWQAPSS YTPLIMPQGV VSVPGFAYSG QMGSISSPEG 240 QQQTAGNSQV YGTSRSGDAA NMGSQGVTSP YRPASVPMGY YALQGENVFP ERHGQPECQF 300 YMKTGDCKFG AVCRFHHPRE RLIPPPDCML SPIGLPLRPG EPLCIFYSRY GICKFGPSCK 360 FDHPMTVFTY SISASSSTDA PAVQRLLGSS SGTSALTLTS EGLVEAVSTK PRRLSLSETR 420 KMPPGDNNID REG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014160 | 0.0 | BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611380.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
Refseq | XP_016481312.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1S4AXF5 | 0.0 | A0A1S4AXF5_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
STRING | XP_009793876.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |