PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009611379.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 437aa    MW: 47785.2 Da    PI: 8.5905
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009611379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.5e-114873227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_009611379.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
                    6899********************97 PP
2zf-CCCH40.16e-1397122227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tGtCk+G++CkF+H++
  XP_009611379.1  97 GQPECQYYLKTGTCKFGATCKFHHPK 122
                     5799********************96 PP
3zf-CCCH39.41e-12144168327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+Ck+G++CkF+H++
  XP_009611379.1 144 EAECAYYMRTGQCKFGSTCKFHHPQ 168
                     689********************97 PP
4zf-CCCH36.67.7e-12299323327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tG Ck+G+ C+F+H++
  XP_009611379.1 299 QPECQFYMKTGDCKFGAVCRFHHPR 323
                     799********************96 PP
5zf-CCCH40.25.8e-13343369127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_009611379.1 343 PGEPLCIFYSRYGICKFGPSCKFDHPM 369
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4834674IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-54673IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-45272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.62995123IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-595122IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1097122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-698124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-5101121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225141169IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6143169IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10144168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4147167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244296324IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4296323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.43E-5299326IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8299323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5302326IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7342369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037342370IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10344369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5345369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4347367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVREGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLYLM QAIATARMKG EYPERMGQPE CQYYLKTGTC KFGATCKFHH  120
PKDKAGIAGR VTLNVLGYPL RPNEAECAYY MRTGQCKFGS TCKFHHPQPS NMMVSLRGSP  180
VYPPVPSATT PGQLSYPLSR GSFIPGARWQ APSSYTPLIM PQGVVSVPGF AYSGQMGSIS  240
SPEGQQQTAG NSQVYGTSRS GDAANMGSQG VTSPYRPASV PMGYYALQGE NVFPERHGQP  300
ECQFYMKTGD CKFGAVCRFH HPRERLIPPP DCMLSPIGLP LRPGEPLCIF YSRYGICKFG  360
PSCKFDHPMT VFTYSISASS STDAPAVQRL LGSSSGTSAL TLTSEGLVEA VSTKPRRLSL  420
SETRKMPPGD NNIDREG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611379.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3
RefseqXP_016481311.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S4AXF80.0A0A1S4AXF8_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X3
STRINGXP_009611374.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-179zinc finger protein 1